Functional clusters
Information
- Type InterPro
- Description Chitin-binding, type 1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_102837_HRSCAF_103074 | 5 | CH_ama_33 | 4 | 25 | 0.0000000243067 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 5 | CH_amhyb_450 | 2 | 2 | 0.000841751 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_219 | 5 | 7 | 0.00000000000025327 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 5 | CH_arhy_570 | 3 | 3 | 0.000000489389 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_35 | 6 | 10 | 1.91485e-17 |
| Brassica carinata | ChrB02 | 5 | CH_bca_155 | 6 | 16 | 0.00000000000221373 |
| Brassica carinata | ChrB04 | 5 | CH_bca_1837 | 3 | 9 | 0.000484867 |
| Brassica carinata | ChrB06 | 5 | CH_bca_975 | 3 | 3 | 0.00000578233 |
| Brassica napus | A05 | 5 | CH_bna_893 | 3 | 4 | 0.0000255043 |
| Brassica rapa | A05 | 5 | CH_bra_271 | 3 | 4 | 0.00000751816 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 5 | CH_bvu_32 | 7 | 11 | 5.38182e-17 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_296 | 3 | 3 | 0.00000439817 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_342 | 4 | 25 | 0.0000253748 |
| Capsicum annuum | PGAv.1.6.scaffold407 | 5 | CH_can_209 | 4 | 4 | 0.00000000230894 |
| Capsicum annuum | PGAv.1.6.scaffold837 | 5 | CH_can_418 | 3 | 3 | 0.00000465791 |
| Coffea canephora | chr3 | 5 | CH_ccan_103 | 4 | 57 | 0.00000000118528 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_10 | 10 | 11 | 2.81351e-30 |
| Carya illinoinensis | Chr06 | 5 | CH_cil_171 | 5 | 6 | 0.00000000000772171 |
| Carya illinoinensis | Chr01 | 5 | CH_cil_475 | 3 | 3 | 0.00000558433 |
| Corchorus olitorius | AWUE01017978.1 | 5 | CH_col_73 | 3 | 3 | 0.00000128001 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 5 | CH_cqu_39 | 8 | 8 | 1.77736e-21 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_15 | 9 | 10 | 2.31962e-26 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_404 | 2 | 2 | 0.0000637775 |
| Durio zibethinus | NW_019167915.1 | 5 | CH_dzi_97 | 5 | 12 | 0.0000000000822055 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_808 | 2 | 2 | 0.000673083 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_327 | 3 | 9 | 0.000000667927 |
| Eutrema salsugineum | scaffold_22 | 5 | CH_esa_18 | 7 | 7 | 1.21685e-20 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_703 | 3 | 4 | 0.00000983686 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_337 | 3 | 4 | 0.00000379313 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_260 | 4 | 4 | 0.000000000236313 |
| Helianthus annuus | HanXRQChr09 | 5 | CH_han_626 | 3 | 4 | 0.00000407592 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_861 | 2 | 2 | 0.00077101 |
| Manihot esculenta | Chromosome18 | 5 | CH_mes_27 | 12 | 17 | 4.11948e-32 |
| Medicago truncatula | chr8 | 5 | CH_mtr_542 | 3 | 3 | 0.0000000886263 |
| Nicotiana tabacum | Nitab4.5_0001586 | 5 | CH_nta_309 | 2 | 2 | 0.000658364 |
| Olea europaea | chr4 | 5 | CH_oeu_431 | 2 | 2 | 0.000160137 |
| Oryza sativa ssp. japonica | chr05 | 5 | CH_osa_296 | 3 | 3 | 0.000000502057 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_313 | 3 | 4 | 0.00000405305 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_129 | 5 | 5 | 0.000000000000518086 |
| Quercus lobata | 11 | 5 | CH_qlo_1059 | 3 | 3 | 0.00000615756 |
| Striga asiatica | scaffold283 | 5 | CH_sas_64 | 3 | 7 | 0.000000821133 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_231 | 4 | 6 | 0.00000000209738 |
| Salix brachista | GWHAAZH00000013 | 5 | CH_sbr_419 | 3 | 7 | 0.0000249969 |
| Simmondsia chinensis | GWHAASQ00000023 | 5 | CH_sci_150 | 3 | 3 | 0.000000380603 |
| Sechium edule | LG14 | 5 | CH_sed_218 | 3 | 4 | 0.0000017099 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1502 | 3 | 3 | 0.0000194225 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_893 | 4 | 4 | 0.0000000141932 |
| Solanum lycopersicum | SL4.0ch07 | 5 | CH_sly_537 | 3 | 4 | 0.0000318184 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_643 | 3 | 5 | 0.0000795104 |
| Selaginella moellendorffii | scaffold_79 | 5 | CH_smo_183 | 3 | 6 | 0.0000313591 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_98 | 6 | 7 | 0.0000000000000015101 |
| Trochodendron aralioides | group5 | 5 | CH_tar_385 | 3 | 4 | 0.00000356771 |
| Tripterygium wilfordii | NC_052252.1 | 5 | CH_twi_25 | 7 | 10 | 9.7365e-19 |
| Avicennia marina | ScioBoG_102837_HRSCAF_103074 | 6 | CH_ama_33 | 4 | 25 | 0.0000000243067 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 6 | CH_amhyb_450 | 2 | 2 | 0.000841751 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_219 | 5 | 7 | 0.00000000000025327 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 6 | CH_arhy_570 | 3 | 3 | 0.000000489389 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_35 | 6 | 10 | 1.91485e-17 |
| Brassica carinata | ChrB02 | 6 | CH_bca_155 | 6 | 16 | 0.00000000000221373 |
| Brassica carinata | ChrB04 | 6 | CH_bca_1837 | 3 | 9 | 0.000484867 |
| Brassica carinata | ChrB06 | 6 | CH_bca_975 | 3 | 3 | 0.00000578233 |
| Brassica napus | A05 | 6 | CH_bna_893 | 3 | 4 | 0.0000255043 |
| Brassica rapa | A05 | 6 | CH_bra_271 | 3 | 4 | 0.00000751816 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 6 | CH_bvu_32 | 7 | 11 | 5.38182e-17 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_296 | 3 | 3 | 0.00000439817 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_342 | 4 | 25 | 0.0000253748 |
| Capsicum annuum | PGAv.1.6.scaffold407 | 6 | CH_can_209 | 4 | 4 | 0.00000000230894 |
| Capsicum annuum | PGAv.1.6.scaffold837 | 6 | CH_can_418 | 3 | 3 | 0.00000465791 |
| Coffea canephora | chr3 | 6 | CH_ccan_103 | 4 | 57 | 0.00000000118528 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_10 | 10 | 11 | 2.81351e-30 |
| Carya illinoinensis | Chr06 | 6 | CH_cil_171 | 5 | 6 | 0.00000000000772171 |
| Carya illinoinensis | Chr01 | 6 | CH_cil_475 | 3 | 3 | 0.00000558433 |
| Corchorus olitorius | AWUE01017978.1 | 6 | CH_col_73 | 3 | 3 | 0.00000128001 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1000 | 6 | CH_cqu_39 | 8 | 8 | 1.77736e-21 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_15 | 9 | 10 | 2.31962e-26 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_404 | 2 | 2 | 0.0000637775 |
| Durio zibethinus | NW_019167915.1 | 6 | CH_dzi_97 | 5 | 12 | 0.0000000000822055 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_808 | 2 | 2 | 0.000673083 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_327 | 3 | 9 | 0.000000667927 |
| Eutrema salsugineum | scaffold_22 | 6 | CH_esa_18 | 7 | 7 | 1.21685e-20 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_703 | 3 | 4 | 0.00000983686 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_337 | 3 | 4 | 0.00000379313 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_260 | 4 | 4 | 0.000000000236313 |
| Helianthus annuus | HanXRQChr09 | 6 | CH_han_626 | 3 | 4 | 0.00000407592 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_861 | 2 | 2 | 0.00077101 |
| Manihot esculenta | Chromosome18 | 6 | CH_mes_27 | 12 | 17 | 4.11948e-32 |
| Medicago truncatula | chr8 | 6 | CH_mtr_542 | 3 | 3 | 0.0000000886263 |
| Nicotiana tabacum | Nitab4.5_0001586 | 6 | CH_nta_309 | 2 | 2 | 0.000658364 |
| Olea europaea | chr4 | 6 | CH_oeu_431 | 2 | 2 | 0.000160137 |
| Oryza sativa ssp. japonica | chr05 | 6 | CH_osa_296 | 3 | 3 | 0.000000502057 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_313 | 3 | 4 | 0.00000405305 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_129 | 5 | 5 | 0.000000000000518086 |
| Quercus lobata | 11 | 6 | CH_qlo_1059 | 3 | 3 | 0.00000615756 |
| Striga asiatica | scaffold283 | 6 | CH_sas_64 | 3 | 7 | 0.000000821133 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_231 | 4 | 6 | 0.00000000209738 |
| Salix brachista | GWHAAZH00000013 | 6 | CH_sbr_419 | 3 | 7 | 0.0000249969 |
| Simmondsia chinensis | GWHAASQ00000023 | 6 | CH_sci_150 | 3 | 3 | 0.000000380603 |
| Sechium edule | LG14 | 6 | CH_sed_218 | 3 | 4 | 0.0000017099 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1502 | 3 | 3 | 0.0000194225 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_893 | 4 | 4 | 0.0000000141932 |
| Solanum lycopersicum | SL4.0ch07 | 6 | CH_sly_537 | 3 | 4 | 0.0000318184 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_643 | 3 | 5 | 0.0000795104 |
| Selaginella moellendorffii | scaffold_79 | 6 | CH_smo_183 | 3 | 6 | 0.0000313591 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_98 | 6 | 7 | 0.0000000000000015101 |
| Trochodendron aralioides | group5 | 6 | CH_tar_385 | 3 | 4 | 0.00000356771 |
| Tripterygium wilfordii | NC_052252.1 | 6 | CH_twi_25 | 7 | 10 | 9.7365e-19 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |