Functional clusters
Information
- Type InterPro
- Description Ribulose bisphosphate carboxylase small subunit, domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_195 | 3 | 3 | 0.0000000261404 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 5 | CH_arhy_1148 | 2 | 2 | 0.000449075 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_220 | 3 | 7 | 0.000000172348 |
| Brassica carinata | ChrC03 | 5 | CH_bca_836 | 3 | 5 | 0.00000195999 |
| Brassica napus | A02 | 5 | CH_bna_681 | 3 | 5 | 0.00000289354 |
| Brassica napus | C02 | 5 | CH_bna_744 | 3 | 6 | 0.00000578651 |
| Brassica napus | C04 | 5 | CH_bna_802 | 3 | 7 | 0.0000101254 |
| Brassica napus | A04 | 5 | CH_bna_850 | 3 | 8 | 0.000016199 |
| Brassica oleracea | C2 | 5 | CH_bol_291 | 3 | 4 | 0.000000358955 |
| Brassica oleracea | C4 | 5 | CH_bol_401 | 3 | 8 | 0.00000502381 |
| Brassica rapa | A04 | 5 | CH_bra_275 | 3 | 9 | 0.00000812406 |
| Brassica rapa | A02 | 5 | CH_bra_605 | 2 | 4 | 0.000901558 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_183 | 3 | 4 | 0.000000164502 |
| Capsicum annuum | PGAv.1.6.scaffold625 | 5 | CH_can_89 | 6 | 9 | 2.03624e-16 |
| Cicer arietinum L. | Ca_LG2_v3 | 5 | CH_car_203 | 2 | 2 | 0.0000778301 |
| Chara braunii | BFEA01000219 | 5 | CH_cbr_261 | 2 | 2 | 0.000215781 |
| Carica papaya | supercontig_1 | 5 | CH_cpa_291 | 2 | 2 | 0.0000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 5 | CH_cqu_401 | 3 | 4 | 0.000000754275 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1352 | 5 | CH_cqu_402 | 3 | 4 | 0.000000754275 |
| Chlamydomonas reinhardtii | chromosome_2 | 5 | CH_cre_106 | 2 | 2 | 0.000113733 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_202 | 3 | 3 | 0.0000000320764 |
| Glycine max | Gm19 | 5 | CH_gma_381 | 3 | 5 | 0.000000756233 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_239 | 4 | 4 | 0.0000000000571305 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_901 | 2 | 2 | 0.000179662 |
| Micromonas commoda | Chr_03 | 5 | CH_mco_18 | 2 | 2 | 0.000197961 |
| Malus domestica | Chr13 | 5 | CH_mdo_1388 | 2 | 2 | 0.000796344 |
| Marchantia polymorpha | scaffold_114 | 5 | CH_mpo_1 | 9 | 9 | 1.5279e-24 |
| Nicotiana tabacum | Nitab4.5_0000912 | 5 | CH_nta_37 | 4 | 4 | 0.0000000000594605 |
| Phaseolus vulgaris | Chr04 | 5 | CH_pvu_217 | 3 | 4 | 0.0000000323894 |
| Striga asiatica | scaffold42 | 5 | CH_sas_211 | 2 | 4 | 0.000562805 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_236 | 3 | 3 | 0.00000000310517 |
| Simmondsia chinensis | GWHAASQ00000011 | 5 | CH_sci_380 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_2020 | 2 | 2 | 0.000146145 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_193 | 5 | CH_tpr_472 | 2 | 2 | 0.0000756974 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_195 | 3 | 3 | 0.0000000261404 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.10 | 6 | CH_arhy_1148 | 2 | 2 | 0.000449075 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_220 | 3 | 7 | 0.000000172348 |
| Brassica carinata | ChrC03 | 6 | CH_bca_836 | 3 | 5 | 0.00000195999 |
| Brassica napus | A02 | 6 | CH_bna_681 | 3 | 5 | 0.00000289354 |
| Brassica napus | C02 | 6 | CH_bna_744 | 3 | 6 | 0.00000578651 |
| Brassica napus | C04 | 6 | CH_bna_802 | 3 | 7 | 0.0000101254 |
| Brassica napus | A04 | 6 | CH_bna_850 | 3 | 8 | 0.000016199 |
| Brassica oleracea | C2 | 6 | CH_bol_291 | 3 | 4 | 0.000000358955 |
| Brassica oleracea | C4 | 6 | CH_bol_401 | 3 | 8 | 0.00000502381 |
| Brassica rapa | A04 | 6 | CH_bra_275 | 3 | 9 | 0.00000812406 |
| Brassica rapa | A02 | 6 | CH_bra_605 | 2 | 4 | 0.000901558 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_183 | 3 | 4 | 0.000000164502 |
| Capsicum annuum | PGAv.1.6.scaffold625 | 6 | CH_can_89 | 6 | 9 | 2.03624e-16 |
| Cicer arietinum L. | Ca_LG2_v3 | 6 | CH_car_203 | 2 | 2 | 0.0000778301 |
| Chara braunii | BFEA01000219 | 6 | CH_cbr_261 | 2 | 2 | 0.000215781 |
| Carica papaya | supercontig_1 | 6 | CH_cpa_291 | 2 | 2 | 0.0000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1710 | 6 | CH_cqu_401 | 3 | 4 | 0.000000754275 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1352 | 6 | CH_cqu_402 | 3 | 4 | 0.000000754275 |
| Chlamydomonas reinhardtii | chromosome_2 | 6 | CH_cre_106 | 2 | 2 | 0.000113733 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_202 | 3 | 3 | 0.0000000320764 |
| Glycine max | Gm19 | 6 | CH_gma_381 | 3 | 5 | 0.000000756233 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_239 | 4 | 4 | 0.0000000000571305 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_901 | 2 | 2 | 0.000179662 |
| Micromonas commoda | Chr_03 | 6 | CH_mco_18 | 2 | 2 | 0.000197961 |
| Malus domestica | Chr13 | 6 | CH_mdo_1388 | 2 | 2 | 0.000796344 |
| Marchantia polymorpha | scaffold_114 | 6 | CH_mpo_1 | 9 | 9 | 1.5279e-24 |
| Nicotiana tabacum | Nitab4.5_0000912 | 6 | CH_nta_37 | 4 | 4 | 0.0000000000594605 |
| Phaseolus vulgaris | Chr04 | 6 | CH_pvu_217 | 3 | 4 | 0.0000000323894 |
| Striga asiatica | scaffold42 | 6 | CH_sas_211 | 2 | 4 | 0.000562805 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_236 | 3 | 3 | 0.00000000310517 |
| Simmondsia chinensis | GWHAASQ00000011 | 6 | CH_sci_380 | 2 | 2 | 0.000255428 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_2020 | 2 | 2 | 0.000146145 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_193 | 6 | CH_tpr_472 | 2 | 2 | 0.0000756974 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |