Functional clusters
Information
- Type InterPro
- Description AMP-dependent synthetase/ligase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_47 | 7 | 25 | 0.000000000015569 |
| Acer truncatum | chr9 | 5 | CH_acertr_813 | 3 | 3 | 0.000242355 |
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_358 | 3 | 3 | 0.0000881747 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_143 | 5 | 10 | 0.00000000155191 |
| Amborella trichopoda | AmTr_v1.0_scaffold00049 | 5 | CH_atr_148 | 5 | 7 | 0.00000000602385 |
| Brassica carinata | ChrB04 | 5 | CH_bca_1969 | 3 | 4 | 0.000676334 |
| Brassica carinata | ChrB03 | 5 | CH_bca_597 | 4 | 4 | 0.000000202595 |
| Brassica napus | A05 | 5 | CH_bna_770 | 4 | 7 | 0.00000714369 |
| Brassica rapa | A05 | 5 | CH_bra_75 | 5 | 5 | 0.000000000106691 |
| Capsicum annuum | PGAv.1.6.scaffold322 | 5 | CH_can_821 | 3 | 4 | 0.000707231 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_552 | 3 | 3 | 0.000101695 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_91 | 7 | 11 | 0.000000000000128065 |
| Carya illinoinensis | Chr03 | 5 | CH_cil_417 | 4 | 5 | 0.00000140919 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 5 | CH_cqu_609 | 5 | 25 | 0.000029358 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_303 | 8 | 13 | 0.0000000000000113253 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_401 | 7 | 12 | 0.00000000000366334 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_448 | 6 | 65 | 0.00000480413 |
| Lupinus albus | Lalb_Chr08 | 5 | CH_lal_201 | 4 | 4 | 0.000000171319 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_155 | 6 | 8 | 0.00000000000616501 |
| Medicago truncatula | chr1 | 5 | CH_mtr_887 | 4 | 11 | 0.0000310509 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_442 | 4 | 14 | 0.0000926732 |
| Prunus persica | Pp07 | 5 | CH_ppe_486 | 4 | 8 | 0.0000107073 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_302 | 4 | 5 | 0.00000183819 |
| Quercus lobata | 1 | 5 | CH_qlo_1338 | 5 | 35 | 0.0000835864 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_361 | 8 | 41 | 0.00000000026863 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_272 | 5 | 11 | 0.0000000466962 |
| Salvia bowleyana | GWHASIU00000008 | 5 | CH_sbo_521 | 3 | 3 | 0.0000770206 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_1204 | 4 | 4 | 0.000000445003 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_1540 | 4 | 8 | 0.0000309727 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_211 | 9 | 10 | 6.40022e-20 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_950 | 5 | 7 | 0.000000016342 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_670 | 3 | 3 | 0.000167995 |
| Schrenkiella parvula | ch1-1 | 5 | CH_spa_52 | 6 | 10 | 0.000000000115857 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_597 | 3 | 3 | 0.0000915696 |
| Trochodendron aralioides | group4 | 5 | CH_tar_336 | 4 | 5 | 0.00000102536 |
| Trochodendron aralioides | group8 | 5 | CH_tar_382 | 4 | 6 | 0.00000307229 |
| Vanilla planifolia | CM028151.1 | 5 | CH_vpl_459 | 3 | 3 | 0.000101066 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_47 | 7 | 25 | 0.000000000015569 |
| Acer truncatum | chr9 | 6 | CH_acertr_813 | 3 | 3 | 0.000242355 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_358 | 3 | 3 | 0.0000881747 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_143 | 5 | 10 | 0.00000000155191 |
| Amborella trichopoda | AmTr_v1.0_scaffold00049 | 6 | CH_atr_148 | 5 | 7 | 0.00000000602385 |
| Brassica carinata | ChrB04 | 6 | CH_bca_1969 | 3 | 4 | 0.000676334 |
| Brassica carinata | ChrB03 | 6 | CH_bca_597 | 4 | 4 | 0.000000202595 |
| Brassica napus | A05 | 6 | CH_bna_770 | 4 | 7 | 0.00000714369 |
| Brassica rapa | A05 | 6 | CH_bra_75 | 5 | 5 | 0.000000000106691 |
| Capsicum annuum | PGAv.1.6.scaffold322 | 6 | CH_can_821 | 3 | 4 | 0.000707231 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_552 | 3 | 3 | 0.000101695 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_91 | 7 | 11 | 0.000000000000128065 |
| Carya illinoinensis | Chr03 | 6 | CH_cil_417 | 4 | 5 | 0.00000140919 |
| Cucumis melo | chr05 | 6 | CH_cme_398 | 3 | 4 | 0.000353282 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 6 | CH_cqu_609 | 5 | 25 | 0.000029358 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_303 | 8 | 13 | 0.0000000000000113253 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_401 | 7 | 12 | 0.00000000000366334 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_448 | 6 | 65 | 0.00000480413 |
| Lupinus albus | Lalb_Chr08 | 6 | CH_lal_201 | 4 | 4 | 0.000000171319 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_155 | 6 | 8 | 0.00000000000616501 |
| Medicago truncatula | chr1 | 6 | CH_mtr_887 | 4 | 11 | 0.0000310509 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_442 | 4 | 14 | 0.0000926732 |
| Prunus persica | Pp07 | 6 | CH_ppe_486 | 4 | 8 | 0.0000107073 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_302 | 4 | 5 | 0.00000183819 |
| Quercus lobata | 1 | 6 | CH_qlo_1338 | 5 | 35 | 0.0000835864 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_361 | 8 | 41 | 0.00000000026863 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_272 | 5 | 11 | 0.0000000466962 |
| Salvia bowleyana | GWHASIU00000008 | 6 | CH_sbo_521 | 3 | 3 | 0.0000770206 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_1204 | 4 | 4 | 0.000000445003 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_1540 | 4 | 8 | 0.0000309727 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_211 | 9 | 10 | 6.40022e-20 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_950 | 5 | 7 | 0.000000016342 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_670 | 3 | 3 | 0.000167995 |
| Schrenkiella parvula | ch1-1 | 6 | CH_spa_52 | 6 | 10 | 0.000000000115857 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_597 | 3 | 3 | 0.0000915696 |
| Trochodendron aralioides | group4 | 6 | CH_tar_336 | 4 | 5 | 0.00000102536 |
| Trochodendron aralioides | group8 | 6 | CH_tar_382 | 4 | 6 | 0.00000307229 |
| Vanilla planifolia | CM028151.1 | 6 | CH_vpl_459 | 3 | 3 | 0.000101066 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |