Functional clusters

Information

  • Type InterPro
  • Description S-locus glycoprotein domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 5 CH_acertr_1035 3 6 0.000973282
Acer truncatum chr4 5 CH_acertr_932 3 5 0.00048707
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 5 CH_amhyb_190 3 3 0.0000215123
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 5 CH_amhyb_261 3 4 0.0000859886
Aquilegia oxysepala CHR05 5 CH_aox_268 3 3 0.0000148582
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 5 CH_arhy_32 17 23 3.13481e-35
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 5 CH_arhy_677 4 4 0.00000290156
Brassica carinata ChrB03 5 CH_bca_1046 4 9 0.00000983144
Brassica carinata ChrC06 5 CH_bca_1165 4 11 0.0000257102
Brassica carinata ChrC07 5 CH_bca_1368 3 3 0.0000832701
Brassica napus C05 5 CH_bna_1087 3 3 0.000117791
Brassica napus C04 5 CH_bna_1452 4 21 0.000703407
Brassica napus A06 5 CH_bna_457 4 4 0.000000119161
Brassica napus A09 5 CH_bna_458 4 4 0.000000119161
Brassica oleracea C5 5 CH_bol_550 3 3 0.0000548411
Brassica oleracea C8 5 CH_bol_575 5 48 0.0000774738
Brassica oleracea C1 5 CH_bol_760 4 23 0.000446004
Brassica oleracea C4 5 CH_bol_806 3 5 0.000547627
Camellia sinensis var. sinensis Chr4 5 CH_camsi_1370 3 3 0.000465034
Camellia sinensis var. sinensis Chr10 5 CH_camsi_982 4 8 0.0000696754
Cannabis sativa NC_044370.1 5 CH_cansat_179 5 7 0.0000000353183
Cannabis sativa NC_044371.1 5 CH_cansat_51 8 11 0.00000000000000257027
Capsicum annuum PGAv.1.6.scaffold640 5 CH_can_215 5 5 0.00000000364208
Capsicum annuum PGAv.1.6.scaffold162 5 CH_can_49 11 15 1.19917e-21
Capsicum annuum PGAv.1.6.scaffold803 5 CH_can_804 3 3 0.000513046
Corylus avellana 7 5 CH_cav_664 4 7 0.000251181
Coffea canephora chr7 5 CH_ccan_89 6 71 0.0000000004476
Citrus clementina scaffold_1 5 CH_ccl_3 30 43 4.49166e-64
Citrus clementina scaffold_2 5 CH_ccl_354 5 9 0.000000731551
Citrus clementina scaffold_2 5 CH_ccl_380 5 11 0.00000145954
Carpinus fangiana Cfa07 5 CH_cfa_116 6 8 0.0000000000146693
Carya illinoinensis Chr15 5 CH_cil_145 8 12 0.00000000000112676
Carya illinoinensis Chr06 5 CH_cil_295 6 10 0.0000000306143
Carya illinoinensis Chr16 5 CH_cil_40 13 17 4.54529e-24
Carya illinoinensis Chr11 5 CH_cil_542 4 5 0.0000457215
Carya illinoinensis Chr10 5 CH_cil_59 11 14 4.83692e-20
Chenopodium quinoa C_Quinoa_Scaffold_1862 5 CH_cqu_200 5 5 0.000000000492254
Chenopodium quinoa C_Quinoa_Scaffold_2947 5 CH_cqu_5 17 24 1.24851e-38
Capsella rubella scaffold_7 5 CH_cru_410 3 3 0.0000397747
Cucumis sativus L. chr3 5 CH_csa_321 3 3 0.0000625495
Daucus carota DCARv2_Chr4 5 CH_dca_146 5 5 0.00000000515162
Davidia involucrata GWHABJS00000020 5 CH_din_13 11 11 6.96803e-27
Davidia involucrata GWHABJS00000002 5 CH_din_610 3 3 0.000196581
Durio zibethinus NW_019167949.1 5 CH_dzi_119 5 5 0.000000000730784
Durio zibethinus NW_019167937.1 5 CH_dzi_306 4 6 0.00000637377
Durio zibethinus NW_019167826.1 5 CH_dzi_470 3 3 0.000245147
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_124 6 8 0.00000000012799
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_209 5 6 0.0000000130273
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_26 14 59 1.48528e-20
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_339 4 4 0.00000102041
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_571 4 8 0.0000709367
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_65 7 9 0.000000000000343386
Eucalyptus grandis Chr06 5 CH_egr_191 11 13 1.87716e-18
Erythranthe guttata scaffold_8 5 CH_egut_360 4 6 0.00000235296
Erythranthe guttata scaffold_8 5 CH_egut_56 9 12 1.74261e-19
Erythranthe guttata scaffold_13 5 CH_egut_57 9 12 1.74261e-19
Fragaria vesca Fvb3 5 CH_fve_1 30 46 3.29914e-61
Fragaria vesca Fvb3 5 CH_fve_189 8 26 0.00000000037696
Glycine max Gm08 5 CH_gma_329 7 34 0.0000000759721
Gossypium raimondii Chr02 5 CH_gra_13 17 23 1.59015e-37
Gossypium raimondii Chr02 5 CH_gra_87 8 11 0.00000000000000154409
Helianthus annuus HanXRQChr17 5 CH_han_1025 4 7 0.000283823
Helianthus annuus HanXRQChr14 5 CH_han_394 7 20 0.0000000256429
Hydrangea macrophylla Hma1.2p1_0240F.1 5 CH_hma_136 4 8 0.000000142287
Lotus japonicus chr3 5 CH_lja_110 6 12 0.00000000288375
Lonicera japonica GWHAAZE00000002 5 CH_lonja_160 8 12 0.00000000000000575367
Lonicera japonica GWHAAZE00000001 5 CH_lonja_48 14 18 1.52786e-30
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_16 18 40 1.12397e-30
Magnolia biondii Chr02 5 CH_mbi_196 7 18 0.0000000000642482
Magnolia biondii Chr02 5 CH_mbi_425 5 12 0.000000180199
Malus domestica Chr05 5 CH_mdo_3 28 64 8.43354e-53
Manihot esculenta Chromosome06 5 CH_mes_233 6 9 0.00000000287751
Medicago truncatula chr4 5 CH_mtr_131 8 8 4.24734e-17
Medicago truncatula chr3 5 CH_mtr_182 10 31 0.00000000000000897255
Medicago truncatula chr8 5 CH_mtr_298 9 41 0.0000000000312366
Medicago truncatula chr8 5 CH_mtr_415 5 5 0.00000000358136
Medicago truncatula chr7 5 CH_mtr_476 5 6 0.0000000214465
Medicago truncatula chr2 5 CH_mtr_74 11 14 1.67895e-22
Medicago truncatula chr7 5 CH_mtr_90 14 56 2.48727e-20
Nelumbo nucifera chr1 5 CH_nnu_14 16 52 3.0423e-29
Olea europaea chr6 5 CH_oeu_1 25 39 2.07702e-55
Olea europaea chr6 5 CH_oeu_19 13 72 6.67001e-18
Olea europaea chr20 5 CH_oeu_509 3 3 0.000288607
Olea europaea chr21 5 CH_oeu_83 6 12 0.00000000179723
Oryza sativa ssp. japonica chr11 5 CH_osa_395 4 5 0.00000937052
Oryza sativa ssp. japonica chr12 5 CH_osa_439 4 6 0.0000280526
Oryza sativa ssp. japonica chr09 5 CH_osa_60 9 14 1.39332e-16
Oryza sativa ssp. japonica chr01 5 CH_osa_678 4 10 0.000389454
Petunia axillaris Peaxi162Scf00560 5 CH_pax_599 3 4 0.000392915
Punica granatum NC_045129.1 5 CH_pgr_295 6 33 0.0000020565
Prunus persica Pp04 5 CH_ppe_30 14 21 1.23481e-27
Prunus persica Pp04 5 CH_ppe_31 15 33 2.40999e-26
Prunus persica Pp01 5 CH_ppe_416 4 4 0.00000143303
Pisum sativum chr1LG6 5 CH_psa_645 4 20 0.00036261
Papaver somniferum NW_020650859.1 5 CH_pso_83 8 15 8.45569e-18
Papaver somniferum NC_039366.1 5 CH_pso_908 3 4 0.0000843817
Populus trichocarpa Chr11 5 CH_ptr_9 25 35 2.99194e-48
Phaseolus vulgaris Chr10 5 CH_pvu_201 5 6 0.0000000108136
Quercus lobata Scq3eQI_100 5 CH_qlo_164 13 20 7.08773e-20
Quercus lobata 8 5 CH_qlo_26 29 78 3.53114e-39
Quercus lobata 3 5 CH_qlo_880 5 5 0.000000416621
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_3 30 52 1.34158e-54
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_402 10 55 0.00000000101323
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_627 5 6 0.000000287286
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_945 5 12 0.0000371864
Rhododendron simsii chr13 5 CH_rsi_15 21 41 5.66422e-39
Rhododendron simsii chr06 5 CH_rsi_166 8 13 0.00000000000017382
Salvia bowleyana GWHASIU00000004 5 CH_sbo_63 11 25 2.71223e-20
Salix brachista GWHAAZH00000011 5 CH_sbr_119 6 6 0.00000000000908958
Salix brachista GWHAAZH00000005 5 CH_sbr_24 13 19 1.00111e-25
Salix brachista GWHAAZH00000004 5 CH_sbr_310 4 4 0.0000014485
Sequoiadendron giganteum chr2 5 CH_sgi_1311 4 4 0.00000136009
Sequoiadendron giganteum chr7 5 CH_sgi_1929 4 8 0.0000944865
Sequoiadendron giganteum chr7 5 CH_sgi_624 6 7 0.0000000000514206
Sapria himalayana scaffold3_21451142 5 CH_shi_122 3 6 0.0000000490426
Solanum lycopersicum SL4.0ch02 5 CH_sly_81 9 17 1.53416e-16
Schrenkiella parvula ch2-2 5 CH_spa_14 7 7 6.31793e-17
Solanum tuberosum ST4.03ch11 5 CH_stu_517 4 8 0.0000146787
Trochodendron aralioides group0 5 CH_tar_27 11 21 7.42654e-20
Trifolium pratense Tp57577_TGAC_v2_scaf_233 5 CH_tpr_562 3 3 0.00018996
Vigna mungo CM024074.1 5 CH_vmu_655 3 4 0.00099331
Vanilla planifolia CM028154.1 5 CH_vpl_497 3 5 0.000212639
Vitis vinifera chr10 5 CH_vvi_663 3 3 0.000454712
Acer truncatum chr10 6 CH_acertr_1035 3 6 0.000973282
Acer truncatum chr4 6 CH_acertr_932 3 5 0.00048707
Amaranthus hybridus AmaHy_arrow1_Scaffold_14 6 CH_amhyb_190 3 3 0.0000215123
Amaranthus hybridus AmaHy_arrow1_Scaffold_9 6 CH_amhyb_261 3 4 0.0000859886
Aquilegia oxysepala CHR05 6 CH_aox_268 3 3 0.0000148582
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 6 CH_arhy_32 17 23 3.13481e-35
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 6 CH_arhy_677 4 4 0.00000290156
Brassica carinata ChrB03 6 CH_bca_1046 4 9 0.00000983144
Brassica carinata ChrC06 6 CH_bca_1165 4 11 0.0000257102
Brassica carinata ChrC07 6 CH_bca_1368 3 3 0.0000832701
Brassica napus C05 6 CH_bna_1087 3 3 0.000117791
Brassica napus C04 6 CH_bna_1452 4 21 0.000703407
Brassica napus A06 6 CH_bna_457 4 4 0.000000119161
Brassica napus A09 6 CH_bna_458 4 4 0.000000119161
Brassica oleracea C5 6 CH_bol_550 3 3 0.0000548411
Brassica oleracea C8 6 CH_bol_575 5 48 0.0000774738
Brassica oleracea C1 6 CH_bol_760 4 23 0.000446004
Brassica oleracea C4 6 CH_bol_806 3 5 0.000547627
Camellia sinensis var. sinensis Chr4 6 CH_camsi_1370 3 3 0.000465034
Camellia sinensis var. sinensis Chr10 6 CH_camsi_982 4 8 0.0000696754
Cannabis sativa NC_044370.1 6 CH_cansat_179 5 7 0.0000000353183
Cannabis sativa NC_044371.1 6 CH_cansat_51 8 11 0.00000000000000257027
Capsicum annuum PGAv.1.6.scaffold640 6 CH_can_215 5 5 0.00000000364208
Capsicum annuum PGAv.1.6.scaffold162 6 CH_can_49 11 15 1.19917e-21
Capsicum annuum PGAv.1.6.scaffold803 6 CH_can_804 3 3 0.000513046
Corylus avellana 7 6 CH_cav_664 4 7 0.000251181
Coffea canephora chr7 6 CH_ccan_89 6 71 0.0000000004476
Citrus clementina scaffold_1 6 CH_ccl_3 30 43 4.49166e-64
Citrus clementina scaffold_2 6 CH_ccl_354 5 9 0.000000731551
Citrus clementina scaffold_2 6 CH_ccl_380 5 11 0.00000145954
Carpinus fangiana Cfa07 6 CH_cfa_116 6 8 0.0000000000146693
Carya illinoinensis Chr15 6 CH_cil_145 8 12 0.00000000000112676
Carya illinoinensis Chr06 6 CH_cil_295 6 10 0.0000000306143
Carya illinoinensis Chr16 6 CH_cil_40 13 17 4.54529e-24
Carya illinoinensis Chr11 6 CH_cil_542 4 5 0.0000457215
Carya illinoinensis Chr10 6 CH_cil_59 11 14 4.83692e-20
Cucumis melo chr04 6 CH_cme_258 3 3 0.0000195267
Chenopodium quinoa C_Quinoa_Scaffold_1862 6 CH_cqu_200 5 5 0.000000000492254
Chenopodium quinoa C_Quinoa_Scaffold_2947 6 CH_cqu_5 17 24 1.24851e-38
Capsella rubella scaffold_7 6 CH_cru_410 3 3 0.0000397747
Cucumis sativus L. chr3 6 CH_csa_321 3 3 0.0000625495
Daucus carota DCARv2_Chr4 6 CH_dca_146 5 5 0.00000000515162
Davidia involucrata GWHABJS00000020 6 CH_din_13 11 11 6.96803e-27
Davidia involucrata GWHABJS00000002 6 CH_din_610 3 3 0.000196581
Durio zibethinus NW_019167949.1 6 CH_dzi_119 5 5 0.000000000730784
Durio zibethinus NW_019167937.1 6 CH_dzi_306 4 6 0.00000637377
Durio zibethinus NW_019167826.1 6 CH_dzi_470 3 3 0.000245147
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_124 6 8 0.00000000012799
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_209 5 6 0.0000000130273
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_26 14 59 1.48528e-20
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_339 4 4 0.00000102041
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_571 4 8 0.0000709367
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_65 7 9 0.000000000000343386
Eucalyptus grandis Chr06 6 CH_egr_191 11 13 1.87716e-18
Erythranthe guttata scaffold_8 6 CH_egut_360 4 6 0.00000235296
Erythranthe guttata scaffold_8 6 CH_egut_56 9 12 1.74261e-19
Erythranthe guttata scaffold_13 6 CH_egut_57 9 12 1.74261e-19
Fragaria x ananassa Fvb6-3 6 CH_fan_20 11 19 8.25846e-21
Fragaria x ananassa Fvb6-1 6 CH_fan_272 6 15 0.00000002518
Fragaria x ananassa Fvb2-2 6 CH_fan_602 4 5 0.0000071888
Fragaria vesca Fvb3 6 CH_fve_1 30 46 3.29914e-61
Fragaria vesca Fvb3 6 CH_fve_189 8 26 0.00000000037696
Glycine max Gm08 6 CH_gma_329 7 34 0.0000000759721
Gossypium raimondii Chr02 6 CH_gra_13 17 23 1.59015e-37
Gossypium raimondii Chr02 6 CH_gra_87 8 11 0.00000000000000154409
Helianthus annuus HanXRQChr17 6 CH_han_1025 4 7 0.000283823
Helianthus annuus HanXRQChr14 6 CH_han_394 7 20 0.0000000256429
Hydrangea macrophylla Hma1.2p1_0240F.1 6 CH_hma_136 4 8 0.000000142287
Lotus japonicus chr3 6 CH_lja_110 6 12 0.00000000288375
Lonicera japonica GWHAAZE00000002 6 CH_lonja_160 8 12 0.00000000000000575367
Lonicera japonica GWHAAZE00000001 6 CH_lonja_48 14 18 1.52786e-30
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_16 18 40 1.12397e-30
Magnolia biondii Chr02 6 CH_mbi_196 7 18 0.0000000000642482
Magnolia biondii Chr02 6 CH_mbi_425 5 12 0.000000180199
Malus domestica Chr05 6 CH_mdo_3 28 64 8.43354e-53
Manihot esculenta Chromosome06 6 CH_mes_233 6 9 0.00000000287751
Medicago truncatula chr4 6 CH_mtr_131 8 8 4.24734e-17
Medicago truncatula chr3 6 CH_mtr_182 10 31 0.00000000000000897255
Medicago truncatula chr8 6 CH_mtr_298 9 41 0.0000000000312366
Medicago truncatula chr8 6 CH_mtr_415 5 5 0.00000000358136
Medicago truncatula chr7 6 CH_mtr_476 5 6 0.0000000214465
Medicago truncatula chr2 6 CH_mtr_74 11 14 1.67895e-22
Medicago truncatula chr7 6 CH_mtr_90 14 56 2.48727e-20
Nelumbo nucifera chr1 6 CH_nnu_14 16 52 3.0423e-29
Olea europaea chr6 6 CH_oeu_1 25 39 2.07702e-55
Olea europaea chr6 6 CH_oeu_19 13 72 6.67001e-18
Olea europaea chr20 6 CH_oeu_509 3 3 0.000288607
Olea europaea chr21 6 CH_oeu_83 6 12 0.00000000179723
Oryza sativa ssp. japonica chr11 6 CH_osa_395 4 5 0.00000937052
Oryza sativa ssp. japonica chr12 6 CH_osa_439 4 6 0.0000280526
Oryza sativa ssp. japonica chr09 6 CH_osa_60 9 14 1.39332e-16
Oryza sativa ssp. japonica chr01 6 CH_osa_678 4 10 0.000389454
Petunia axillaris Peaxi162Scf00560 6 CH_pax_599 3 4 0.000392915
Punica granatum NC_045129.1 6 CH_pgr_295 6 33 0.0000020565
Prunus persica Pp04 6 CH_ppe_30 14 21 1.23481e-27
Prunus persica Pp04 6 CH_ppe_31 15 33 2.40999e-26
Prunus persica Pp01 6 CH_ppe_416 4 4 0.00000143303
Pisum sativum chr1LG6 6 CH_psa_645 4 20 0.00036261
Papaver somniferum NW_020650859.1 6 CH_pso_83 8 15 8.45569e-18
Papaver somniferum NC_039366.1 6 CH_pso_908 3 4 0.0000843817
Populus trichocarpa Chr11 6 CH_ptr_9 25 35 2.99194e-48
Phaseolus vulgaris Chr10 6 CH_pvu_201 5 6 0.0000000108136
Quercus lobata Scq3eQI_100 6 CH_qlo_164 13 20 7.08773e-20
Quercus lobata 8 6 CH_qlo_26 29 78 3.53114e-39
Quercus lobata 3 6 CH_qlo_880 5 5 0.000000416621
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_3 30 52 1.34158e-54
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_402 10 55 0.00000000101323
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_627 5 6 0.000000287286
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_945 5 12 0.0000371864
Rhododendron simsii chr13 6 CH_rsi_15 21 41 5.66422e-39
Rhododendron simsii chr06 6 CH_rsi_166 8 13 0.00000000000017382
Salvia bowleyana GWHASIU00000004 6 CH_sbo_63 11 25 2.71223e-20
Salix brachista GWHAAZH00000011 6 CH_sbr_119 6 6 0.00000000000908958
Salix brachista GWHAAZH00000005 6 CH_sbr_24 13 19 1.00111e-25
Salix brachista GWHAAZH00000004 6 CH_sbr_310 4 4 0.0000014485
Sequoiadendron giganteum chr2 6 CH_sgi_1311 4 4 0.00000136009
Sequoiadendron giganteum chr7 6 CH_sgi_1929 4 8 0.0000944865
Sequoiadendron giganteum chr7 6 CH_sgi_624 6 7 0.0000000000514206
Sapria himalayana scaffold3_21451142 6 CH_shi_122 3 6 0.0000000490426
Solanum lycopersicum SL4.0ch02 6 CH_sly_81 9 17 1.53416e-16
Schrenkiella parvula ch2-2 6 CH_spa_14 7 7 6.31793e-17
Solanum tuberosum ST4.03ch11 6 CH_stu_517 4 8 0.0000146787
Trochodendron aralioides group0 6 CH_tar_27 11 21 7.42654e-20
Trifolium pratense Tp57577_TGAC_v2_scaf_233 6 CH_tpr_562 3 3 0.00018996
Vigna mungo CM024074.1 6 CH_vmu_655 3 4 0.00099331
Vanilla planifolia CM028154.1 6 CH_vpl_497 3 5 0.000212639
Vitis vinifera chr10 6 CH_vvi_663 3 3 0.000454712

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001