Functional clusters
Information
- Type InterPro
- Description Nucleoside phosphorylase domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr12 | 5 | CH_acertr_864 | 2 | 2 | 0.000422982 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_670 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_513 | 2 | 3 | 0.000286492 |
| Amborella trichopoda | AmTr_v1.0_scaffold00109 | 5 | CH_atr_478 | 2 | 2 | 0.000238322 |
| Brassica carinata | Contig973 | 5 | CH_bca_201 | 4 | 4 | 0.0000000000293342 |
| Brassica napus | A03 | 5 | CH_bna_801 | 3 | 7 | 0.0000101254 |
| Brassica oleracea | C1 | 5 | CH_bol_886 | 2 | 2 | 0.000915212 |
| Brassica rapa | A03 | 5 | CH_bra_99 | 4 | 7 | 0.00000000209293 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 5 | CH_bvu_200 | 3 | 3 | 0.000000359875 |
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_991 | 3 | 13 | 0.0000756776 |
| Coffea canephora | chr0 | 5 | CH_ccan_107 | 4 | 30 | 0.00000000181586 |
| Coffea canephora | chr2 | 5 | CH_ccan_95 | 4 | 23 | 0.000000000559195 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_393 | 2 | 2 | 0.000473878 |
| Carya illinoinensis | Chr08 | 5 | CH_cil_359 | 3 | 3 | 0.000000322727 |
| Citrullus lanatus | CG_Chr06 | 5 | CH_cla_369 | 2 | 3 | 0.000798344 |
| Corchorus olitorius | AWUE01016487.1 | 5 | CH_col_205 | 2 | 2 | 0.000876296 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1001 | 5 | CH_cqu_189 | 4 | 4 | 0.00000000031947 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 5 | CH_cqu_244 | 4 | 6 | 0.00000000479001 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_640 | 2 | 2 | 0.000731154 |
| Davidia involucrata | GWHABJS00000003 | 5 | CH_din_800 | 2 | 2 | 0.000750188 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_319 | 3 | 5 | 0.00000060398 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_793 | 3 | 3 | 0.000000616601 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_507 | 2 | 2 | 0.000761499 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_71 | 5 | 5 | 0.00000000000000189722 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_1143 | 2 | 2 | 0.000598874 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_536 | 3 | 6 | 0.0000014149 |
| Malus domestica | Chr15 | 5 | CH_mdo_390 | 3 | 3 | 0.0000000215706 |
| Manihot esculenta | Chromosome09 | 5 | CH_mes_49 | 8 | 9 | 1.48156e-24 |
| Medicago truncatula | chr3 | 5 | CH_mtr_1333 | 2 | 2 | 0.000616295 |
| Medicago truncatula | chr6 | 5 | CH_mtr_585 | 3 | 4 | 0.000000202561 |
| Oryza sativa ssp. japonica | chr06 | 5 | CH_osa_778 | 2 | 3 | 0.000950562 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_610 | 2 | 2 | 0.000312981 |
| Populus trichocarpa | Chr08 | 5 | CH_ptr_420 | 3 | 3 | 0.0000028064 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_471 | 3 | 4 | 0.0000112221 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_98 | 6 | 7 | 8.13681e-16 |
| Quercus lobata | 4 | 5 | CH_qlo_953 | 3 | 3 | 0.00000114355 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_106 | 10 | 16 | 8.09765e-27 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_852 | 5 | 19 | 0.0000000056874 |
| Solanum lycopersicum | SL4.0ch08 | 5 | CH_sly_382 | 3 | 5 | 0.00000103333 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_103 | 4 | 4 | 0.00000000000924027 |
| Trochodendron aralioides | group10 | 5 | CH_tar_111 | 4 | 4 | 0.0000000000454472 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_735 | 2 | 3 | 0.000681233 |
| Acer truncatum | chr12 | 6 | CH_acertr_864 | 2 | 2 | 0.000422982 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_670 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_513 | 2 | 3 | 0.000286492 |
| Amborella trichopoda | AmTr_v1.0_scaffold00109 | 6 | CH_atr_478 | 2 | 2 | 0.000238322 |
| Brassica carinata | Contig973 | 6 | CH_bca_201 | 4 | 4 | 0.0000000000293342 |
| Brassica napus | A03 | 6 | CH_bna_801 | 3 | 7 | 0.0000101254 |
| Brassica oleracea | C1 | 6 | CH_bol_886 | 2 | 2 | 0.000915212 |
| Brassica rapa | A03 | 6 | CH_bra_99 | 4 | 7 | 0.00000000209293 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 6 | CH_bvu_200 | 3 | 3 | 0.000000359875 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_991 | 3 | 13 | 0.0000756776 |
| Coffea canephora | chr0 | 6 | CH_ccan_107 | 4 | 30 | 0.00000000181586 |
| Coffea canephora | chr2 | 6 | CH_ccan_95 | 4 | 23 | 0.000000000559195 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_393 | 2 | 2 | 0.000473878 |
| Carya illinoinensis | Chr08 | 6 | CH_cil_359 | 3 | 3 | 0.000000322727 |
| Citrullus lanatus | CG_Chr06 | 6 | CH_cla_369 | 2 | 3 | 0.000798344 |
| Corchorus olitorius | AWUE01016487.1 | 6 | CH_col_205 | 2 | 2 | 0.000876296 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1001 | 6 | CH_cqu_189 | 4 | 4 | 0.00000000031947 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3107 | 6 | CH_cqu_244 | 4 | 6 | 0.00000000479001 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_640 | 2 | 2 | 0.000731154 |
| Davidia involucrata | GWHABJS00000003 | 6 | CH_din_800 | 2 | 2 | 0.000750188 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_319 | 3 | 5 | 0.00000060398 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_793 | 3 | 3 | 0.000000616601 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_507 | 2 | 2 | 0.000761499 |
| Fragaria x ananassa | Fvb2-1 | 6 | CH_fan_333 | 3 | 3 | 0.000000112988 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_71 | 5 | 5 | 0.00000000000000189722 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_1143 | 2 | 2 | 0.000598874 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_536 | 3 | 6 | 0.0000014149 |
| Malus domestica | Chr15 | 6 | CH_mdo_390 | 3 | 3 | 0.0000000215706 |
| Manihot esculenta | Chromosome09 | 6 | CH_mes_49 | 8 | 9 | 1.48156e-24 |
| Medicago truncatula | chr3 | 6 | CH_mtr_1333 | 2 | 2 | 0.000616295 |
| Medicago truncatula | chr6 | 6 | CH_mtr_585 | 3 | 4 | 0.000000202561 |
| Oryza sativa ssp. japonica | chr06 | 6 | CH_osa_778 | 2 | 3 | 0.000950562 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_610 | 2 | 2 | 0.000312981 |
| Populus trichocarpa | Chr08 | 6 | CH_ptr_420 | 3 | 3 | 0.0000028064 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_471 | 3 | 4 | 0.0000112221 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_98 | 6 | 7 | 8.13681e-16 |
| Quercus lobata | 4 | 6 | CH_qlo_953 | 3 | 3 | 0.00000114355 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_106 | 10 | 16 | 8.09765e-27 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_852 | 5 | 19 | 0.0000000056874 |
| Solanum lycopersicum | SL4.0ch08 | 6 | CH_sly_382 | 3 | 5 | 0.00000103333 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_103 | 4 | 4 | 0.00000000000924027 |
| Trochodendron aralioides | group10 | 6 | CH_tar_111 | 4 | 4 | 0.0000000000454472 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_735 | 2 | 3 | 0.000681233 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |