Functional clusters

Information

  • Type InterPro
  • Description Glycoside hydrolase, family 28

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 5 CH_acertr_436 4 7 0.00000713151
Avicennia marina ScioBoG_102840_HRSCAF_103099 5 CH_ama_19 5 7 0.0000000014765
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 5 CH_amhyb_274 3 4 0.000155214
Amborella trichopoda AmTr_v1.0_scaffold00019 5 CH_atr_252 6 35 0.000000584509
Amborella trichopoda AmTr_v1.0_scaffold00104 5 CH_atr_539 3 4 0.000434185
Brassica carinata ChrB02 5 CH_bca_146 7 10 0.00000000000142283
Brassica carinata ChrC01 5 CH_bca_1641 4 10 0.000320618
Brassica carinata ChrC06 5 CH_bca_2058 3 3 0.000771238
Brassica carinata ChrB06 5 CH_bca_808 4 4 0.0000015415
Brassica napus A05 5 CH_bna_1255 4 10 0.000320384
Brassica napus C03 5 CH_bna_1459 4 12 0.000752859
Brassica napus A02 5 CH_bna_1468 3 3 0.000797674
Brassica napus C08 5 CH_bna_877 4 7 0.0000230267
Brassica oleracea C1 5 CH_bol_224 5 8 0.0000000507554
Brassica rapa A04 5 CH_bra_202 4 4 0.000000822538
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_107 6 12 0.000000000751193
Camellia sinensis var. sinensis Chr10 5 CH_camsi_410 5 8 0.0000000152861
Camellia sinensis var. sinensis Contig795 5 CH_camsi_447 5 9 0.0000000343534
Cannabis sativa NC_044373.1 5 CH_cansat_246 4 4 0.000000575128
Capsicum annuum PGAv.1.6.scaffold74 5 CH_can_521 3 3 0.0000612592
Chara braunii BFEA01000114 5 CH_cbr_362 3 24 0.000876455
Coffea canephora chr3 5 CH_ccan_149 5 63 0.0000000303087
Coffea canephora chr3 5 CH_ccan_420 4 80 0.0000733413
Coffea canephora chr9 5 CH_ccan_59 6 60 0.0000000000220178
Citrus clementina scaffold_7 5 CH_ccl_355 5 20 0.000000740493
Ceratophyllum demersum 11 5 CH_cde_274 3 3 0.000183398
Carpinus fangiana Cfa06 5 CH_cfa_439 3 3 0.000106181
Cardamine hirsuta Chr3 5 CH_chi_239 5 7 0.0000000501135
Carya illinoinensis Chr03 5 CH_cil_45 10 10 5.13756e-23
Carya illinoinensis Chr04 5 CH_cil_56 9 9 2.63067e-20
Citrullus lanatus CG_Chr08 5 CH_cla_114 4 4 0.000000407583
Chenopodium quinoa C_Quinoa_Scaffold_2187 5 CH_cqu_178 6 9 0.000000000115447
Daucus carota DCARv2_Chr9 5 CH_dca_584 3 3 0.000379492
Daucus carota DCARv2_Chr8 5 CH_dca_585 3 3 0.000379492
Davidia involucrata GWHABJS00000013 5 CH_din_29 10 14 1.76781e-21
Durio zibethinus NW_019167938.1 5 CH_dzi_107 5 5 0.000000000309362
Durio zibethinus NW_019167982.1 5 CH_dzi_108 5 5 0.000000000309362
Durio zibethinus NW_019167982.1 5 CH_dzi_559 3 4 0.000589169
Durio zibethinus NW_019168015.1 5 CH_dzi_66 6 6 0.000000000000437367
Eucalyptus grandis Chr06 5 CH_egr_1208 3 3 0.000184929
Eucalyptus grandis Chr08 5 CH_egr_375 6 6 0.000000000000858221
Eucalyptus grandis Chr01 5 CH_egr_848 4 5 0.00000156735
Erythranthe guttata scaffold_7 5 CH_egut_238 6 15 0.0000000126029
Erythranthe guttata scaffold_8 5 CH_egut_626 3 3 0.000286237
Gossypium hirsutum A02 5 CH_ghi_50 12 12 7.54694e-28
Gossypium hirsutum A09 5 CH_ghi_754 4 6 0.0000266843
Gossypium hirsutum A13 5 CH_ghi_998 4 9 0.000222971
Gossypium raimondii Chr11 5 CH_gra_541 3 3 0.000225885
Helianthus annuus HanXRQChr13 5 CH_han_34 15 59 1.14687e-25
Lupinus albus Lalb_Chr17 5 CH_lal_296 4 4 0.00000299837
Lupinus albus Lalb_Chr17 5 CH_lal_37 8 8 2.04452e-16
Lupinus albus Lalb_Chr07 5 CH_lal_78 7 10 0.00000000000859067
Lonicera japonica GWHAAZE00000003 5 CH_lonja_103 9 9 1.6578e-19
Lonicera japonica GWHAAZE00000006 5 CH_lonja_120 10 16 3.17826e-18
Lonicera japonica GWHAAZE00000104 5 CH_lonja_131 10 19 3.64211e-17
Lonicera japonica GWHAAZE00000001 5 CH_lonja_166 8 11 0.0000000000000110642
Lonicera japonica GWHAAZE00000008 5 CH_lonja_248 6 6 0.0000000000107947
Lactuca sativa Lsat_1_v8_lg_6 5 CH_lsa_181 6 10 0.0000000000436065
Magnolia biondii Chr07 5 CH_mbi_241 7 27 0.000000000495699
Magnolia biondii Chr10 5 CH_mbi_361 5 9 0.0000000367815
Malus domestica Chr00 5 CH_mdo_1060 3 3 0.000198193
Malus domestica Chr00 5 CH_mdo_1061 3 3 0.000198193
Malus domestica Chr09 5 CH_mdo_503 4 4 0.00000030064
Manihot esculenta Chromosome11 5 CH_mes_51 13 13 2.34584e-24
Manihot esculenta Chromosome07 5 CH_mes_6 30 30 1.13762e-61
Manihot esculenta Chromosome09 5 CH_mes_62 20 77 1.23939e-21
Marchantia polymorpha scaffold_160 5 CH_mpo_40 4 4 0.000000000282942
Nelumbo nucifera chr1 5 CH_nnu_15 12 15 7.54164e-27
Nelumbo nucifera chr1 5 CH_nnu_293 5 18 0.0000054721
Olea europaea chr6 5 CH_oeu_12 9 9 2.84451e-22
Oryza sativa ssp. japonica chr06 5 CH_osa_685 3 6 0.0004453
Prunus persica Pp03 5 CH_ppe_43 11 11 5.09669e-24
Prunus persica Pp06 5 CH_ppe_870 3 3 0.000854254
Prunus persica Pp01 5 CH_ppe_871 3 3 0.000854254
Pisum sativum chr1LG6 5 CH_psa_309 5 21 0.00000318814
Phaseolus vulgaris Chr10 5 CH_pvu_41 12 25 1.3169e-21
Phaseolus vulgaris Chr07 5 CH_pvu_68 8 9 1.44873e-16
Quercus lobata 8 5 CH_qlo_1626 3 3 0.0003541
Quercus lobata 10 5 CH_qlo_236 10 23 4.42542e-17
Quercus lobata 8 5 CH_qlo_499 6 8 0.0000000000806679
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_382 6 12 0.000000000577559
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_538 5 9 0.0000000535299
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_601 5 11 0.000000195786
Rhododendron simsii chr08 5 CH_rsi_589 4 11 0.0000195143
Salvia bowleyana GWHASIU00000007 5 CH_sbo_605 4 16 0.000173406
Sechium edule LG06 5 CH_sed_46 12 80 0.0000000000000712258
Sechium edule LG05 5 CH_sed_481 3 3 0.000515539
Sequoiadendron giganteum chr2 5 CH_sgi_1960 3 3 0.000134633
Sequoiadendron giganteum chr7 5 CH_sgi_60 15 22 5.34027e-34
Sequoiadendron giganteum chr4 5 CH_sgi_646 6 10 0.0000000000793319
Schrenkiella parvula ch7-5 5 CH_spa_310 3 3 0.000318209
Trochodendron aralioides group10 5 CH_tar_410 5 28 0.00000797038
Theobroma cacao Chromosome_1 5 CH_tca_659 3 4 0.000342717
Tarenaya hassleriana NW_010966177.1 5 CH_tha_124 4 4 0.00000069219
Tarenaya hassleriana NW_010971389.1 5 CH_tha_277 3 3 0.000319658
Trifolium pratense Tp57577_TGAC_v2_scaf_587 5 CH_tpr_261 4 4 0.000000937949
Trifolium pratense Tp57577_TGAC_v2_LG5 5 CH_tpr_49 7 8 0.0000000000000921776
Trifolium pratense Tp57577_TGAC_v2_LG5 5 CH_tpr_661 3 3 0.000393328
Tripterygium wilfordii NC_052244.1 5 CH_twi_159 5 9 0.000000058766
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_213 5 11 0.000000147577
Vigna mungo CM024078.1 5 CH_vmu_15 10 17 1.39936e-19
Vanilla planifolia CM028153.1 5 CH_vpl_89 6 17 0.00000000369055
Vitis vinifera chr13 5 CH_vvi_398 4 5 0.00000343906
Zea mays 5 5 CH_zma_157 5 9 0.0000000415969
Zea mays 6 5 CH_zma_4 18 23 3.38509e-43
Acer truncatum chr4 6 CH_acertr_436 4 7 0.00000713151
Avicennia marina ScioBoG_102840_HRSCAF_103099 6 CH_ama_19 5 7 0.0000000014765
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 6 CH_amhyb_274 3 4 0.000155214
Amborella trichopoda AmTr_v1.0_scaffold00019 6 CH_atr_252 6 35 0.000000584509
Amborella trichopoda AmTr_v1.0_scaffold00104 6 CH_atr_539 3 4 0.000434185
Brassica carinata ChrB02 6 CH_bca_146 7 10 0.00000000000142283
Brassica carinata ChrC01 6 CH_bca_1641 4 10 0.000320618
Brassica carinata ChrC06 6 CH_bca_2058 3 3 0.000771238
Brassica carinata ChrB06 6 CH_bca_808 4 4 0.0000015415
Brassica napus A05 6 CH_bna_1255 4 10 0.000320384
Brassica napus C03 6 CH_bna_1459 4 12 0.000752859
Brassica napus A02 6 CH_bna_1468 3 3 0.000797674
Brassica napus C08 6 CH_bna_877 4 7 0.0000230267
Brassica oleracea C1 6 CH_bol_224 5 8 0.0000000507554
Brassica rapa A04 6 CH_bra_202 4 4 0.000000822538
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_107 6 12 0.000000000751193
Camellia sinensis var. sinensis Chr10 6 CH_camsi_410 5 8 0.0000000152861
Camellia sinensis var. sinensis Contig795 6 CH_camsi_447 5 9 0.0000000343534
Cannabis sativa NC_044373.1 6 CH_cansat_246 4 4 0.000000575128
Capsicum annuum PGAv.1.6.scaffold74 6 CH_can_521 3 3 0.0000612592
Chara braunii BFEA01000114 6 CH_cbr_362 3 24 0.000876455
Coffea canephora chr3 6 CH_ccan_149 5 63 0.0000000303087
Coffea canephora chr3 6 CH_ccan_420 4 80 0.0000733413
Coffea canephora chr9 6 CH_ccan_59 6 60 0.0000000000220178
Citrus clementina scaffold_7 6 CH_ccl_355 5 20 0.000000740493
Ceratophyllum demersum 11 6 CH_cde_274 3 3 0.000183398
Carpinus fangiana Cfa06 6 CH_cfa_439 3 3 0.000106181
Cardamine hirsuta Chr3 6 CH_chi_239 5 7 0.0000000501135
Carya illinoinensis Chr03 6 CH_cil_45 10 10 5.13756e-23
Carya illinoinensis Chr04 6 CH_cil_56 9 9 2.63067e-20
Citrullus lanatus CG_Chr08 6 CH_cla_114 4 4 0.000000407583
Cucumis melo chr01 6 CH_cme_150 7 34 0.0000000577321
Cucumis melo chr04 6 CH_cme_436 3 3 0.000415207
Cucumis melo chr05 6 CH_cme_437 3 3 0.000415207
Chenopodium quinoa C_Quinoa_Scaffold_2187 6 CH_cqu_178 6 9 0.000000000115447
Daucus carota DCARv2_Chr9 6 CH_dca_584 3 3 0.000379492
Daucus carota DCARv2_Chr8 6 CH_dca_585 3 3 0.000379492
Davidia involucrata GWHABJS00000013 6 CH_din_29 10 14 1.76781e-21
Durio zibethinus NW_019167938.1 6 CH_dzi_107 5 5 0.000000000309362
Durio zibethinus NW_019167982.1 6 CH_dzi_108 5 5 0.000000000309362
Durio zibethinus NW_019167982.1 6 CH_dzi_559 3 4 0.000589169
Durio zibethinus NW_019168015.1 6 CH_dzi_66 6 6 0.000000000000437367
Eucalyptus grandis Chr06 6 CH_egr_1208 3 3 0.000184929
Eucalyptus grandis Chr08 6 CH_egr_375 6 6 0.000000000000858221
Eucalyptus grandis Chr01 6 CH_egr_848 4 5 0.00000156735
Erythranthe guttata scaffold_7 6 CH_egut_238 6 15 0.0000000126029
Erythranthe guttata scaffold_8 6 CH_egut_626 3 3 0.000286237
Fragaria x ananassa Fvb1-3 6 CH_fan_1263 5 35 0.000841567
Fragaria x ananassa Fvb6-3 6 CH_fan_832 6 53 0.000108638
Gossypium hirsutum A02 6 CH_ghi_50 12 12 7.54694e-28
Gossypium hirsutum A09 6 CH_ghi_754 4 6 0.0000266843
Gossypium hirsutum A13 6 CH_ghi_998 4 9 0.000222971
Gossypium raimondii Chr11 6 CH_gra_541 3 3 0.000225885
Helianthus annuus HanXRQChr13 6 CH_han_34 15 59 1.14687e-25
Lupinus albus Lalb_Chr17 6 CH_lal_296 4 4 0.00000299837
Lupinus albus Lalb_Chr17 6 CH_lal_37 8 8 2.04452e-16
Lupinus albus Lalb_Chr07 6 CH_lal_78 7 10 0.00000000000859067
Lonicera japonica GWHAAZE00000003 6 CH_lonja_103 9 9 1.6578e-19
Lonicera japonica GWHAAZE00000006 6 CH_lonja_120 10 16 3.17826e-18
Lonicera japonica GWHAAZE00000104 6 CH_lonja_131 10 19 3.64211e-17
Lonicera japonica GWHAAZE00000001 6 CH_lonja_166 8 11 0.0000000000000110642
Lonicera japonica GWHAAZE00000008 6 CH_lonja_248 6 6 0.0000000000107947
Lactuca sativa Lsat_1_v8_lg_6 6 CH_lsa_181 6 10 0.0000000000436065
Magnolia biondii Chr07 6 CH_mbi_241 7 27 0.000000000495699
Magnolia biondii Chr10 6 CH_mbi_361 5 9 0.0000000367815
Malus domestica Chr00 6 CH_mdo_1060 3 3 0.000198193
Malus domestica Chr00 6 CH_mdo_1061 3 3 0.000198193
Malus domestica Chr09 6 CH_mdo_503 4 4 0.00000030064
Manihot esculenta Chromosome11 6 CH_mes_51 13 13 2.34584e-24
Manihot esculenta Chromosome07 6 CH_mes_6 30 30 1.13762e-61
Manihot esculenta Chromosome09 6 CH_mes_62 20 77 1.23939e-21
Marchantia polymorpha scaffold_160 6 CH_mpo_40 4 4 0.000000000282942
Nelumbo nucifera chr1 6 CH_nnu_15 12 15 7.54164e-27
Nelumbo nucifera chr1 6 CH_nnu_293 5 18 0.0000054721
Olea europaea chr6 6 CH_oeu_12 9 9 2.84451e-22
Oryza sativa ssp. japonica chr06 6 CH_osa_685 3 6 0.0004453
Prunus persica Pp03 6 CH_ppe_43 11 11 5.09669e-24
Prunus persica Pp06 6 CH_ppe_870 3 3 0.000854254
Prunus persica Pp01 6 CH_ppe_871 3 3 0.000854254
Pisum sativum chr1LG6 6 CH_psa_309 5 21 0.00000318814
Phaseolus vulgaris Chr10 6 CH_pvu_41 12 25 1.3169e-21
Phaseolus vulgaris Chr07 6 CH_pvu_68 8 9 1.44873e-16
Quercus lobata 8 6 CH_qlo_1626 3 3 0.0003541
Quercus lobata 10 6 CH_qlo_236 10 23 4.42542e-17
Quercus lobata 8 6 CH_qlo_499 6 8 0.0000000000806679
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_382 6 12 0.000000000577559
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_538 5 9 0.0000000535299
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_601 5 11 0.000000195786
Rhododendron simsii chr08 6 CH_rsi_589 4 11 0.0000195143
Salvia bowleyana GWHASIU00000007 6 CH_sbo_605 4 16 0.000173406
Sechium edule LG06 6 CH_sed_46 12 80 0.0000000000000712258
Sechium edule LG05 6 CH_sed_481 3 3 0.000515539
Sequoiadendron giganteum chr2 6 CH_sgi_1960 3 3 0.000134633
Sequoiadendron giganteum chr7 6 CH_sgi_60 15 22 5.34027e-34
Sequoiadendron giganteum chr4 6 CH_sgi_646 6 10 0.0000000000793319
Schrenkiella parvula ch7-5 6 CH_spa_310 3 3 0.000318209
Trochodendron aralioides group10 6 CH_tar_410 5 28 0.00000797038
Theobroma cacao Chromosome_1 6 CH_tca_659 3 4 0.000342717
Tarenaya hassleriana NW_010966177.1 6 CH_tha_124 4 4 0.00000069219
Tarenaya hassleriana NW_010971389.1 6 CH_tha_277 3 3 0.000319658
Trifolium pratense Tp57577_TGAC_v2_scaf_587 6 CH_tpr_261 4 4 0.000000937949
Trifolium pratense Tp57577_TGAC_v2_LG5 6 CH_tpr_49 7 8 0.0000000000000921776
Trifolium pratense Tp57577_TGAC_v2_LG5 6 CH_tpr_661 3 3 0.000393328
Tripterygium wilfordii NC_052244.1 6 CH_twi_159 5 9 0.000000058766
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_213 5 11 0.000000147577
Vigna mungo CM024078.1 6 CH_vmu_15 10 17 1.39936e-19
Vanilla planifolia CM028153.1 6 CH_vpl_89 6 17 0.00000000369055
Vitis vinifera chr13 6 CH_vvi_398 4 5 0.00000343906
Zea mays 5 6 CH_zma_157 5 9 0.0000000415969
Zea mays 6 6 CH_zma_4 18 23 3.38509e-43

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001