Functional clusters

Information

  • Type InterPro
  • Description Glycoside hydrolase, family 19, catalytic

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 5 CH_aar_96 4 4 0.000000000287079
Acer truncatum chr4 5 CH_acertr_83 5 6 0.00000000000143037
Actinidia chinensis Lachesis_group26 5 CH_ach_157 3 3 0.00000097379
Arabidopsis lyrata scaffold_4 5 CH_aly_28 7 8 1.78829e-19
Amborella trichopoda AmTr_v1.0_scaffold00001 5 CH_atr_44 7 12 2.68827e-17
Brassica carinata ChrC02 5 CH_bca_1464 3 5 0.000134241
Brassica carinata ChrC01 5 CH_bca_78 6 6 0.00000000000000159605
Brassica carinata ChrB01 5 CH_bca_95 6 7 0.0000000000000111678
Brassica napus C03 5 CH_bna_1101 3 5 0.000135484
Brassica napus C04 5 CH_bna_1210 3 6 0.000270867
Brassica napus C03 5 CH_bna_52 7 9 2.3513e-17
Brassica oleracea C4 5 CH_bol_546 3 5 0.0000524674
Brassica oleracea C8 5 CH_bol_713 3 8 0.000293533
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_294 5 67 0.0000144852
Camellia sinensis var. sinensis Chr2 5 CH_camsi_495 4 6 0.000000102958
Capsicum annuum PGAv.1.6.scaffold890 5 CH_can_228 4 6 0.00000000836853
Corylus avellana 1 5 CH_cav_14 14 30 3.77288e-31
Chara braunii BFEA01000111 5 CH_cbr_19 5 11 0.0000000000000927404
Coffea canephora chr7 5 CH_ccan_147 3 6 0.0000000239422
Citrus clementina scaffold_3 5 CH_ccl_101 6 7 0.00000000000000292819
Citrus clementina scaffold_8 5 CH_ccl_448 3 4 0.0000183637
Carya illinoinensis Chr02 5 CH_cil_21 11 14 5.46689e-29
Citrullus lanatus CG_Chr01 5 CH_cla_48 4 4 0.00000000026393
Chenopodium quinoa C_Quinoa_Scaffold_4446 5 CH_cqu_280 4 6 0.000000028632
Chenopodium quinoa C_Quinoa_Scaffold_4413 5 CH_cqu_95 6 8 0.000000000000008161
Cucumis sativus L. chr6 5 CH_csa_67 5 5 0.0000000000000917943
Davidia involucrata GWHABJS00000014 5 CH_din_164 4 4 0.00000000114845
Davidia involucrata GWHABJS00000002 5 CH_din_347 3 3 0.00000306161
Davidia involucrata GWHABJS00000016 5 CH_din_60 6 6 1.30724e-16
Durio zibethinus NW_019167904.1 5 CH_dzi_74 5 5 0.0000000000011648
Durio zibethinus NW_019168470.1 5 CH_dzi_83 5 6 0.00000000000698619
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_149 4 6 0.00000000051221
Eucalyptus grandis Chr09 5 CH_egr_399 6 12 0.00000000000327761
Eucalyptus grandis Chr08 5 CH_egr_76 10 10 3.03685e-28
Fragaria vesca Fvb4 5 CH_fve_603 3 8 0.000162994
Gossypium hirsutum D02 5 CH_ghi_378 4 4 0.00000000469775
Gossypium hirsutum D01 5 CH_ghi_702 3 3 0.00000977392
Gossypium raimondii Chr06 5 CH_gra_204 4 5 0.00000000549951
Gossypium raimondii Chr05 5 CH_gra_327 3 3 0.00000293167
Helianthus annuus HanXRQChr14 5 CH_han_681 3 4 0.00000867986
Lonicera japonica GWHAAZE00000009 5 CH_lonja_179 6 6 0.0000000000000281418
Lonicera japonica GWHAAZE00000003 5 CH_lonja_42 13 17 1.13619e-32
Lonicera japonica GWHAAZE00000007 5 CH_lonja_682 4 14 0.0000335154
Lonicera japonica GWHAAZE00000004 5 CH_lonja_93 8 8 2.04957e-20
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_275 5 42 0.0000000111694
Magnolia biondii Chr08 5 CH_mbi_437 5 45 0.000000220513
Malus domestica Chr04 5 CH_mdo_800 3 7 0.0000274617
Manihot esculenta Chromosome04 5 CH_mes_106 6 10 0.0000000000000120384
Medicago truncatula chr2 5 CH_mtr_710 3 4 0.000001671
Punica granatum NC_045133.1 5 CH_pgr_112 5 5 0.0000000000282411
Prunus persica Pp01 5 CH_ppe_251 5 17 0.00000000184359
Populus trichocarpa Chr09 5 CH_ptr_131 5 5 0.00000000000071735
Phaseolus vulgaris Chr09 5 CH_pvu_208 4 6 0.000000017856
Quercus lobata 10 5 CH_qlo_113 11 18 1.58812e-23
Quercus lobata 11 5 CH_qlo_398 6 7 0.00000000000149094
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_1044 3 6 0.0000633569
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_155 7 16 4.1961e-16
Rosa chinensis RcHm_v2.0_Chr6 5 CH_rch_874 3 4 0.0000126787
Rhododendron simsii chr10 5 CH_rsi_23 14 25 7.10395e-35
Salvia bowleyana GWHASIU00000006 5 CH_sbo_32 10 13 1.35668e-29
Simmondsia chinensis GWHAASQ00000008 5 CH_sci_149 3 3 0.000000380603
Sechium edule LG10 5 CH_sed_62 5 7 0.00000000000816496
Sequoiadendron giganteum chr3 5 CH_sgi_289 7 7 7.75251e-17
Sequoiadendron giganteum chr1 5 CH_sgi_405 7 13 0.000000000000132318
Sequoiadendron giganteum chr7 5 CH_sgi_59 14 19 5.18302e-34
Sapria himalayana scaffold14_12630789 5 CH_shi_182 3 10 0.000000588427
Solanum lycopersicum SL4.0ch10 5 CH_sly_12 13 23 7.24739e-33
Selaginella moellendorffii scaffold_11 5 CH_smo_194 3 4 0.0000506585
Selaginella moellendorffii scaffold_118 5 CH_smo_241 3 5 0.000126569
Selaginella moellendorffii scaffold_85 5 CH_smo_46 6 21 0.000000000233204
Solanum pennellii Spenn-ch10 5 CH_spe_81 5 5 0.00000000000012824
Solanum tuberosum ST4.03ch00 5 CH_stu_309 4 8 0.0000000282649
Solanum tuberosum ST4.03ch02 5 CH_stu_512 3 5 0.0000143319
Tripterygium wilfordii NC_052238.1 5 CH_twi_304 3 4 0.0000152127
Utricularia gibba unitig_0 5 CH_ugi_10 5 6 0.0000000000000122379
Vanilla planifolia CM028150.1 5 CH_vpl_605 2 2 0.000443328
Vitis vinifera chr5 5 CH_vvi_34 9 13 8.12232e-25
Aethionema arabicum LG-1 6 CH_aar_96 4 4 0.000000000287079
Acer truncatum chr4 6 CH_acertr_83 5 6 0.00000000000143037
Actinidia chinensis Lachesis_group26 6 CH_ach_157 3 3 0.00000097379
Arabidopsis lyrata scaffold_4 6 CH_aly_28 7 8 1.78829e-19
Amborella trichopoda AmTr_v1.0_scaffold00001 6 CH_atr_44 7 12 2.68827e-17
Brassica carinata ChrC02 6 CH_bca_1464 3 5 0.000134241
Brassica carinata ChrC01 6 CH_bca_78 6 6 0.00000000000000159605
Brassica carinata ChrB01 6 CH_bca_95 6 7 0.0000000000000111678
Brassica napus C03 6 CH_bna_1101 3 5 0.000135484
Brassica napus C04 6 CH_bna_1210 3 6 0.000270867
Brassica napus C03 6 CH_bna_52 7 9 2.3513e-17
Brassica oleracea C4 6 CH_bol_546 3 5 0.0000524674
Brassica oleracea C8 6 CH_bol_713 3 8 0.000293533
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_294 5 67 0.0000144852
Camellia sinensis var. sinensis Chr2 6 CH_camsi_495 4 6 0.000000102958
Capsicum annuum PGAv.1.6.scaffold890 6 CH_can_228 4 6 0.00000000836853
Corylus avellana 1 6 CH_cav_14 14 30 3.77288e-31
Chara braunii BFEA01000111 6 CH_cbr_19 5 11 0.0000000000000927404
Coffea canephora chr7 6 CH_ccan_147 3 6 0.0000000239422
Citrus clementina scaffold_3 6 CH_ccl_101 6 7 0.00000000000000292819
Citrus clementina scaffold_8 6 CH_ccl_448 3 4 0.0000183637
Carya illinoinensis Chr02 6 CH_cil_21 11 14 5.46689e-29
Citrullus lanatus CG_Chr01 6 CH_cla_48 4 4 0.00000000026393
Chenopodium quinoa C_Quinoa_Scaffold_4446 6 CH_cqu_280 4 6 0.000000028632
Chenopodium quinoa C_Quinoa_Scaffold_4413 6 CH_cqu_95 6 8 0.000000000000008161
Cucumis sativus L. chr6 6 CH_csa_67 5 5 0.0000000000000917943
Davidia involucrata GWHABJS00000014 6 CH_din_164 4 4 0.00000000114845
Davidia involucrata GWHABJS00000002 6 CH_din_347 3 3 0.00000306161
Davidia involucrata GWHABJS00000016 6 CH_din_60 6 6 1.30724e-16
Durio zibethinus NW_019167904.1 6 CH_dzi_74 5 5 0.0000000000011648
Durio zibethinus NW_019168470.1 6 CH_dzi_83 5 6 0.00000000000698619
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_149 4 6 0.00000000051221
Eucalyptus grandis Chr09 6 CH_egr_399 6 12 0.00000000000327761
Eucalyptus grandis Chr08 6 CH_egr_76 10 10 3.03685e-28
Fragaria x ananassa Fvb1-1 6 CH_fan_560 3 3 0.00000469361
Fragaria vesca Fvb4 6 CH_fve_603 3 8 0.000162994
Gossypium hirsutum D02 6 CH_ghi_378 4 4 0.00000000469775
Gossypium hirsutum D01 6 CH_ghi_702 3 3 0.00000977392
Gossypium raimondii Chr06 6 CH_gra_204 4 5 0.00000000549951
Gossypium raimondii Chr05 6 CH_gra_327 3 3 0.00000293167
Helianthus annuus HanXRQChr14 6 CH_han_681 3 4 0.00000867986
Lonicera japonica GWHAAZE00000009 6 CH_lonja_179 6 6 0.0000000000000281418
Lonicera japonica GWHAAZE00000003 6 CH_lonja_42 13 17 1.13619e-32
Lonicera japonica GWHAAZE00000007 6 CH_lonja_682 4 14 0.0000335154
Lonicera japonica GWHAAZE00000004 6 CH_lonja_93 8 8 2.04957e-20
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_275 5 42 0.0000000111694
Magnolia biondii Chr08 6 CH_mbi_437 5 45 0.000000220513
Malus domestica Chr04 6 CH_mdo_800 3 7 0.0000274617
Manihot esculenta Chromosome04 6 CH_mes_106 6 10 0.0000000000000120384
Medicago truncatula chr2 6 CH_mtr_710 3 4 0.000001671
Punica granatum NC_045133.1 6 CH_pgr_112 5 5 0.0000000000282411
Prunus persica Pp01 6 CH_ppe_251 5 17 0.00000000184359
Populus trichocarpa Chr09 6 CH_ptr_131 5 5 0.00000000000071735
Phaseolus vulgaris Chr09 6 CH_pvu_208 4 6 0.000000017856
Quercus lobata 10 6 CH_qlo_113 11 18 1.58812e-23
Quercus lobata 11 6 CH_qlo_398 6 7 0.00000000000149094
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_1044 3 6 0.0000633569
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_155 7 16 4.1961e-16
Rosa chinensis RcHm_v2.0_Chr6 6 CH_rch_874 3 4 0.0000126787
Rhododendron simsii chr10 6 CH_rsi_23 14 25 7.10395e-35
Salvia bowleyana GWHASIU00000006 6 CH_sbo_32 10 13 1.35668e-29
Simmondsia chinensis GWHAASQ00000008 6 CH_sci_149 3 3 0.000000380603
Sechium edule LG10 6 CH_sed_62 5 7 0.00000000000816496
Sequoiadendron giganteum chr3 6 CH_sgi_289 7 7 7.75251e-17
Sequoiadendron giganteum chr1 6 CH_sgi_405 7 13 0.000000000000132318
Sequoiadendron giganteum chr7 6 CH_sgi_59 14 19 5.18302e-34
Sapria himalayana scaffold14_12630789 6 CH_shi_182 3 10 0.000000588427
Solanum lycopersicum SL4.0ch10 6 CH_sly_12 13 23 7.24739e-33
Selaginella moellendorffii scaffold_11 6 CH_smo_194 3 4 0.0000506585
Selaginella moellendorffii scaffold_118 6 CH_smo_241 3 5 0.000126569
Selaginella moellendorffii scaffold_85 6 CH_smo_46 6 21 0.000000000233204
Solanum pennellii Spenn-ch10 6 CH_spe_81 5 5 0.00000000000012824
Solanum tuberosum ST4.03ch00 6 CH_stu_309 4 8 0.0000000282649
Solanum tuberosum ST4.03ch02 6 CH_stu_512 3 5 0.0000143319
Tripterygium wilfordii NC_052238.1 6 CH_twi_304 3 4 0.0000152127
Utricularia gibba unitig_0 6 CH_ugi_10 5 6 0.0000000000000122379
Vanilla planifolia CM028150.1 6 CH_vpl_605 2 2 0.000443328
Vitis vinifera chr5 6 CH_vvi_34 9 13 8.12232e-25

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001