Functional clusters

Information

  • Type InterPro
  • Description EamA domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 5 CH_aar_294 3 3 0.000123358
Acer truncatum chr6 5 CH_acertr_217 5 9 0.0000000223692
Arabidopsis lyrata scaffold_5 5 CH_aly_131 5 5 0.000000000195164
Arabidopsis lyrata scaffold_7 5 CH_aly_625 3 4 0.000396375
Arabidopsis lyrata scaffold_6 5 CH_aly_626 3 4 0.000396375
Avicennia marina ScioBoG_102831_HRSCAF_103044 5 CH_ama_141 3 3 0.000137624
Avicennia marina ScioBoG_4088_HRSCAF_4107 5 CH_ama_216 3 4 0.00054976
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 5 CH_arhy_1119 3 3 0.000358862
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 5 CH_arhy_1120 3 3 0.000358862
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 5 CH_arhy_873 4 8 0.0000430066
Arabidopsis thaliana Chr5 5 CH_ath_535 3 6 0.000398689
Brassica carinata ChrC08 5 CH_bca_1762 3 3 0.000442075
Brassica carinata ChrB01 5 CH_bca_1763 3 3 0.000442075
Brassica carinata ChrB06 5 CH_bca_1764 3 3 0.000442075
Brassica carinata ChrC04 5 CH_bca_920 4 5 0.00000365709
Brassica napus C04 5 CH_bna_1331 3 3 0.000445966
Brassica napus C06 5 CH_bna_343 5 6 0.00000000669143
Brassica napus A04 5 CH_bna_697 4 5 0.00000353435
Brassica oleracea C4 5 CH_bol_471 4 8 0.0000178259
Brassica rapa A04 5 CH_bra_242 4 5 0.00000289387
Beta vulgaris Chr8_EL10_PGA_scaffold4 5 CH_bvu_306 3 3 0.0000267335
Camellia sinensis var. sinensis Chr9 5 CH_camsi_24 12 21 1.43901e-25
Capsicum annuum PGAv.1.6.scaffold205 5 CH_can_489 4 11 0.0000290103
Capsicum annuum PGAv.1.6.scaffold1076 5 CH_can_524 3 3 0.0000670022
Coffea canephora chr7 5 CH_ccan_214 4 35 0.000000772956
Citrus clementina scaffold_6 5 CH_ccl_575 3 3 0.00011588
Citrus clementina scaffold_4 5 CH_ccl_576 3 3 0.00011588
Citrus clementina scaffold_1 5 CH_ccl_577 3 3 0.00011588
Cardamine hirsuta Chr8 5 CH_chi_288 4 4 0.000000268234
Cardamine hirsuta Chr1 5 CH_chi_568 3 3 0.000158384
Capsella rubella scaffold_7 5 CH_cru_255 4 4 0.000000270079
Capsella rubella scaffold_6 5 CH_cru_497 3 3 0.000157174
Eucalyptus grandis Chr02 5 CH_egr_1235 3 3 0.000269218
Eucalyptus grandis Chr04 5 CH_egr_1236 3 3 0.000269218
Eucalyptus grandis Chr07 5 CH_egr_600 5 6 0.00000000592577
Eucalyptus grandis Chr11 5 CH_egr_878 4 5 0.00000259597
Eutrema salsugineum scaffold_6 5 CH_esa_371 3 3 0.000160262
Eutrema salsugineum scaffold_5 5 CH_esa_372 3 3 0.000160262
Eutrema salsugineum scaffold_3 5 CH_esa_373 3 3 0.000160262
Gossypium hirsutum A05 5 CH_ghi_1162 3 3 0.000438527
Gossypium hirsutum A05 5 CH_ghi_228 6 6 0.0000000000024003
Gossypium hirsutum D02 5 CH_ghi_566 4 4 0.000000778693
Gossypium hirsutum D04 5 CH_ghi_567 4 4 0.000000778693
Gossypium hirsutum D05 5 CH_ghi_648 4 5 0.00000388792
Glycine max Gm04 5 CH_gma_127 6 6 0.00000000000647545
Glycine max Gm01 5 CH_gma_407 4 4 0.0000013476
Glycine max Gm06 5 CH_gma_408 4 4 0.0000013476
Glycine max Gm11 5 CH_gma_894 3 3 0.000606894
Glycine max Gm15 5 CH_gma_895 3 3 0.000606894
Glycine max Gm02 5 CH_gma_896 3 3 0.000606894
Gossypium raimondii Chr12 5 CH_gra_277 4 4 0.000000376478
Gossypium raimondii Chr09 5 CH_gra_278 4 4 0.000000376478
Gossypium raimondii Chr05 5 CH_gra_538 3 3 0.000216064
Gossypium raimondii Chr10 5 CH_gra_686 3 4 0.000863102
Helianthus annuus HanXRQChr16 5 CH_han_342 5 8 0.00000000604403
Helianthus annuus HanXRQChr03 5 CH_han_860 3 3 0.0000847149
Hydrangea macrophylla Hma1.2p1_0267F.1 5 CH_hma_57 5 6 0.000000000230456
Lupinus albus Lalb_Chr10 5 CH_lal_566 3 3 0.000278994
Lupinus albus Lalb_Chr14 5 CH_lal_567 3 3 0.000278994
Lonicera japonica GWHAAZE00000007 5 CH_lonja_476 4 4 0.00000031424
Lonicera japonica GWHAAZE00000005 5 CH_lonja_961 3 3 0.000184101
Magnolia biondii Chr04 5 CH_mbi_652 4 12 0.0000114258
Medicago truncatula chr2 5 CH_mtr_1128 3 3 0.000216046
Medicago truncatula chr5 5 CH_mtr_498 5 8 0.0000000305474
Medicago truncatula chr5 5 CH_mtr_598 5 11 0.000000251019
Medicago truncatula chr3 5 CH_mtr_613 4 4 0.000000346199
Medicago truncatula chr8 5 CH_mtr_789 4 6 0.00000517963
Medicago truncatula chr3 5 CH_mtr_790 4 6 0.00000517963
Olea europaea chr11 5 CH_oeu_146 4 5 0.000000168288
Olea europaea scaffold680 5 CH_oeu_288 3 3 0.0000360561
Olea europaea scaffold221 5 CH_oeu_397 3 4 0.000144119
Oryza sativa ssp. japonica chr01 5 CH_osa_534 3 3 0.0000924622
Oryza sativa ssp. japonica chr07 5 CH_osa_547 4 14 0.000118523
Prunus persica Pp01 5 CH_ppe_357 4 4 0.000000222142
Prunus persica Pp01 5 CH_ppe_644 3 3 0.00013535
Pisum sativum chr4LG4 5 CH_psa_184 6 20 0.0000000273088
Pisum sativum chr5LG3 5 CH_psa_202 5 9 0.0000000574947
Pisum sativum chr7LG7 5 CH_psa_99 8 36 0.0000000000487185
Quercus lobata 3 5 CH_qlo_560 5 5 0.000000000693917
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_1071 3 3 0.000104129
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_549 7 58 0.0000000627927
Sequoiadendron giganteum chr10 5 CH_sgi_1893 3 3 0.0000615709
Sequoiadendron giganteum chr9 5 CH_sgi_230 8 9 6.96272e-19
Sequoiadendron giganteum chr3 5 CH_sgi_316 7 9 6.19643e-16
Solanum pennellii Spenn-ch08 5 CH_spe_305 4 5 0.000000235263
Solanum pennellii Spenn-ch01 5 CH_spe_579 3 3 0.0000481203
Solanum tuberosum ST4.03ch05 5 CH_stu_310 4 4 0.000000029803
Tarenaya hassleriana NW_010961290.1 5 CH_tha_219 3 3 0.000161732
Tarenaya hassleriana NW_010967707.1 5 CH_tha_72 5 6 0.00000000278026
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_123 5 5 0.000000000940861
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_637 3 3 0.000238266
Utricularia gibba unitig_37 5 CH_ugi_99 3 3 0.0000232259
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_650 3 4 0.000338712
Vigna mungo CM024072.1 5 CH_vmu_119 5 6 0.00000000756375
Vigna mungo CM024074.1 5 CH_vmu_139 5 7 0.0000000264281
Vigna mungo CM024073.1 5 CH_vmu_282 4 7 0.0000216047
Vigna mungo CM024075.1 5 CH_vmu_381 4 9 0.0000775189
Vigna mungo CM024069.1 5 CH_vmu_80 6 8 0.0000000000705882
Zea mays 9 5 CH_zma_196 5 16 0.000000379522
Zea mays 6 5 CH_zma_418 3 4 0.000271079
Aethionema arabicum LG-5 6 CH_aar_294 3 3 0.000123358
Acer truncatum chr6 6 CH_acertr_217 5 9 0.0000000223692
Arabidopsis lyrata scaffold_5 6 CH_aly_131 5 5 0.000000000195164
Arabidopsis lyrata scaffold_7 6 CH_aly_625 3 4 0.000396375
Arabidopsis lyrata scaffold_6 6 CH_aly_626 3 4 0.000396375
Avicennia marina ScioBoG_102831_HRSCAF_103044 6 CH_ama_141 3 3 0.000137624
Avicennia marina ScioBoG_4088_HRSCAF_4107 6 CH_ama_216 3 4 0.00054976
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 6 CH_arhy_1119 3 3 0.000358862
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 6 CH_arhy_1120 3 3 0.000358862
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 6 CH_arhy_873 4 8 0.0000430066
Arabidopsis thaliana Chr5 6 CH_ath_535 3 6 0.000398689
Brassica carinata ChrC08 6 CH_bca_1762 3 3 0.000442075
Brassica carinata ChrB01 6 CH_bca_1763 3 3 0.000442075
Brassica carinata ChrB06 6 CH_bca_1764 3 3 0.000442075
Brassica carinata ChrC04 6 CH_bca_920 4 5 0.00000365709
Brassica napus C04 6 CH_bna_1331 3 3 0.000445966
Brassica napus C06 6 CH_bna_343 5 6 0.00000000669143
Brassica napus A04 6 CH_bna_697 4 5 0.00000353435
Brassica oleracea C4 6 CH_bol_471 4 8 0.0000178259
Brassica rapa A04 6 CH_bra_242 4 5 0.00000289387
Beta vulgaris Chr8_EL10_PGA_scaffold4 6 CH_bvu_306 3 3 0.0000267335
Camellia sinensis var. sinensis Chr9 6 CH_camsi_24 12 21 1.43901e-25
Capsicum annuum PGAv.1.6.scaffold205 6 CH_can_489 4 11 0.0000290103
Capsicum annuum PGAv.1.6.scaffold1076 6 CH_can_524 3 3 0.0000670022
Coffea canephora chr7 6 CH_ccan_214 4 35 0.000000772956
Citrus clementina scaffold_6 6 CH_ccl_575 3 3 0.00011588
Citrus clementina scaffold_4 6 CH_ccl_576 3 3 0.00011588
Citrus clementina scaffold_1 6 CH_ccl_577 3 3 0.00011588
Cardamine hirsuta Chr8 6 CH_chi_288 4 4 0.000000268234
Cardamine hirsuta Chr1 6 CH_chi_568 3 3 0.000158384
Cucumis melo chr04 6 CH_cme_183 4 4 0.000000281703
Cucumis melo chr09 6 CH_cme_284 4 10 0.0000586739
Cucumis melo chr08 6 CH_cme_49 8 13 0.00000000000000246475
Capsella rubella scaffold_7 6 CH_cru_255 4 4 0.000000270079
Capsella rubella scaffold_6 6 CH_cru_497 3 3 0.000157174
Eucalyptus grandis Chr02 6 CH_egr_1235 3 3 0.000269218
Eucalyptus grandis Chr04 6 CH_egr_1236 3 3 0.000269218
Eucalyptus grandis Chr07 6 CH_egr_600 5 6 0.00000000592577
Eucalyptus grandis Chr11 6 CH_egr_878 4 5 0.00000259597
Eutrema salsugineum scaffold_6 6 CH_esa_371 3 3 0.000160262
Eutrema salsugineum scaffold_5 6 CH_esa_372 3 3 0.000160262
Eutrema salsugineum scaffold_3 6 CH_esa_373 3 3 0.000160262
Fragaria x ananassa Fvb6-3 6 CH_fan_1205 3 4 0.000786716
Fragaria x ananassa Fvb7-2 6 CH_fan_1206 3 4 0.000786716
Fragaria x ananassa Fvb6-4 6 CH_fan_916 3 3 0.000196858
Fragaria x ananassa Fvb2-4 6 CH_fan_917 3 3 0.000196858
Gossypium hirsutum A05 6 CH_ghi_1162 3 3 0.000438527
Gossypium hirsutum A05 6 CH_ghi_228 6 6 0.0000000000024003
Gossypium hirsutum D02 6 CH_ghi_566 4 4 0.000000778693
Gossypium hirsutum D04 6 CH_ghi_567 4 4 0.000000778693
Gossypium hirsutum D05 6 CH_ghi_648 4 5 0.00000388792
Glycine max Gm04 6 CH_gma_127 6 6 0.00000000000647545
Glycine max Gm01 6 CH_gma_407 4 4 0.0000013476
Glycine max Gm06 6 CH_gma_408 4 4 0.0000013476
Glycine max Gm11 6 CH_gma_894 3 3 0.000606894
Glycine max Gm15 6 CH_gma_895 3 3 0.000606894
Glycine max Gm02 6 CH_gma_896 3 3 0.000606894
Gossypium raimondii Chr12 6 CH_gra_277 4 4 0.000000376478
Gossypium raimondii Chr09 6 CH_gra_278 4 4 0.000000376478
Gossypium raimondii Chr05 6 CH_gra_538 3 3 0.000216064
Gossypium raimondii Chr10 6 CH_gra_686 3 4 0.000863102
Helianthus annuus HanXRQChr16 6 CH_han_342 5 8 0.00000000604403
Helianthus annuus HanXRQChr03 6 CH_han_860 3 3 0.0000847149
Hydrangea macrophylla Hma1.2p1_0267F.1 6 CH_hma_57 5 6 0.000000000230456
Lupinus albus Lalb_Chr10 6 CH_lal_566 3 3 0.000278994
Lupinus albus Lalb_Chr14 6 CH_lal_567 3 3 0.000278994
Lonicera japonica GWHAAZE00000007 6 CH_lonja_476 4 4 0.00000031424
Lonicera japonica GWHAAZE00000005 6 CH_lonja_961 3 3 0.000184101
Magnolia biondii Chr04 6 CH_mbi_652 4 12 0.0000114258
Medicago truncatula chr2 6 CH_mtr_1128 3 3 0.000216046
Medicago truncatula chr5 6 CH_mtr_498 5 8 0.0000000305474
Medicago truncatula chr5 6 CH_mtr_598 5 11 0.000000251019
Medicago truncatula chr3 6 CH_mtr_613 4 4 0.000000346199
Medicago truncatula chr8 6 CH_mtr_789 4 6 0.00000517963
Medicago truncatula chr3 6 CH_mtr_790 4 6 0.00000517963
Olea europaea chr11 6 CH_oeu_146 4 5 0.000000168288
Olea europaea scaffold680 6 CH_oeu_288 3 3 0.0000360561
Olea europaea scaffold221 6 CH_oeu_397 3 4 0.000144119
Oryza sativa ssp. japonica chr01 6 CH_osa_534 3 3 0.0000924622
Oryza sativa ssp. japonica chr07 6 CH_osa_547 4 14 0.000118523
Prunus persica Pp01 6 CH_ppe_357 4 4 0.000000222142
Prunus persica Pp01 6 CH_ppe_644 3 3 0.00013535
Pisum sativum chr4LG4 6 CH_psa_184 6 20 0.0000000273088
Pisum sativum chr5LG3 6 CH_psa_202 5 9 0.0000000574947
Pisum sativum chr7LG7 6 CH_psa_99 8 36 0.0000000000487185
Quercus lobata 3 6 CH_qlo_560 5 5 0.000000000693917
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_1071 3 3 0.000104129
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_549 7 58 0.0000000627927
Sequoiadendron giganteum chr10 6 CH_sgi_1893 3 3 0.0000615709
Sequoiadendron giganteum chr9 6 CH_sgi_230 8 9 6.96272e-19
Sequoiadendron giganteum chr3 6 CH_sgi_316 7 9 6.19643e-16
Solanum pennellii Spenn-ch08 6 CH_spe_305 4 5 0.000000235263
Solanum pennellii Spenn-ch01 6 CH_spe_579 3 3 0.0000481203
Solanum tuberosum ST4.03ch05 6 CH_stu_310 4 4 0.000000029803
Tarenaya hassleriana NW_010961290.1 6 CH_tha_219 3 3 0.000161732
Tarenaya hassleriana NW_010967707.1 6 CH_tha_72 5 6 0.00000000278026
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_123 5 5 0.000000000940861
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_637 3 3 0.000238266
Utricularia gibba unitig_37 6 CH_ugi_99 3 3 0.0000232259
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_650 3 4 0.000338712
Vigna mungo CM024072.1 6 CH_vmu_119 5 6 0.00000000756375
Vigna mungo CM024074.1 6 CH_vmu_139 5 7 0.0000000264281
Vigna mungo CM024073.1 6 CH_vmu_282 4 7 0.0000216047
Vigna mungo CM024075.1 6 CH_vmu_381 4 9 0.0000775189
Vigna mungo CM024069.1 6 CH_vmu_80 6 8 0.0000000000705882
Zea mays 9 6 CH_zma_196 5 16 0.000000379522
Zea mays 6 6 CH_zma_418 3 4 0.000271079

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001