Functional clusters
Information
- Type InterPro
- Description Ubiquitin-conjugating enzyme E2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_231 | 4 | 6 | 0.00000412901 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_965 | 4 | 13 | 0.000104864 |
| Brassica carinata | ChrB03 | 5 | CH_bca_1860 | 3 | 3 | 0.000561237 |
| Brassica carinata | ChrC08 | 5 | CH_bca_1975 | 4 | 13 | 0.000711296 |
| Brassica napus | C09 | 5 | CH_bna_1061 | 4 | 8 | 0.000105098 |
| Brassica napus | A05 | 5 | CH_bna_1467 | 3 | 3 | 0.000786333 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_283 | 4 | 7 | 0.00000243847 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_375 | 3 | 3 | 0.0000591101 |
| Chara braunii | BFEA01000126 | 5 | CH_cbr_222 | 3 | 6 | 0.000176677 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_560 | 3 | 3 | 0.000123955 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_257 | 5 | 10 | 0.0000000856033 |
| Erythranthe guttata | scaffold_4 | 5 | CH_egut_265 | 5 | 9 | 0.0000000559818 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_600 | 3 | 3 | 0.000160629 |
| Gossypium hirsutum | D11 | 5 | CH_ghi_1294 | 3 | 3 | 0.000771908 |
| Glycine max | Gm17 | 5 | CH_gma_781 | 3 | 3 | 0.000328679 |
| Gossypium raimondii | Chr07 | 5 | CH_gra_587 | 3 | 3 | 0.000425824 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_478 | 4 | 4 | 0.000000260117 |
| Helianthus annuus | HanXRQChr12 | 5 | CH_han_949 | 3 | 3 | 0.000177133 |
| Lupinus albus | Lalb_Chr10 | 5 | CH_lal_654 | 3 | 3 | 0.000379626 |
| Medicago truncatula | chr8 | 5 | CH_mtr_1205 | 3 | 4 | 0.000265509 |
| Medicago truncatula | chr1 | 5 | CH_mtr_534 | 4 | 4 | 0.0000000709683 |
| Prunus persica | Pp07 | 5 | CH_ppe_566 | 4 | 10 | 0.0000647966 |
| Papaver somniferum | NW_020619603.1 | 5 | CH_pso_731 | 4 | 7 | 0.0000119784 |
| Phaseolus vulgaris | Chr03 | 5 | CH_pvu_487 | 3 | 3 | 0.000114906 |
| Quercus lobata | 8 | 5 | CH_qlo_416 | 6 | 7 | 0.00000000000288968 |
| Quercus lobata | 6 | 5 | CH_qlo_538 | 5 | 5 | 0.00000000029108 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1277 | 3 | 4 | 0.000342883 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_669 | 3 | 3 | 0.000167995 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_220 | 4 | 4 | 0.000000118935 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_72 | 6 | 8 | 0.00000000000599881 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_552 | 3 | 3 | 0.000269743 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_553 | 3 | 3 | 0.000269743 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_231 | 4 | 6 | 0.00000412901 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_965 | 4 | 13 | 0.000104864 |
| Brassica carinata | ChrB03 | 6 | CH_bca_1860 | 3 | 3 | 0.000561237 |
| Brassica carinata | ChrC08 | 6 | CH_bca_1975 | 4 | 13 | 0.000711296 |
| Brassica napus | C09 | 6 | CH_bna_1061 | 4 | 8 | 0.000105098 |
| Brassica napus | A05 | 6 | CH_bna_1467 | 3 | 3 | 0.000786333 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_283 | 4 | 7 | 0.00000243847 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_375 | 3 | 3 | 0.0000591101 |
| Chara braunii | BFEA01000126 | 6 | CH_cbr_222 | 3 | 6 | 0.000176677 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_560 | 3 | 3 | 0.000123955 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_257 | 5 | 10 | 0.0000000856033 |
| Erythranthe guttata | scaffold_4 | 6 | CH_egut_265 | 5 | 9 | 0.0000000559818 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_600 | 3 | 3 | 0.000160629 |
| Gossypium hirsutum | D11 | 6 | CH_ghi_1294 | 3 | 3 | 0.000771908 |
| Glycine max | Gm17 | 6 | CH_gma_781 | 3 | 3 | 0.000328679 |
| Gossypium raimondii | Chr07 | 6 | CH_gra_587 | 3 | 3 | 0.000425824 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_478 | 4 | 4 | 0.000000260117 |
| Helianthus annuus | HanXRQChr12 | 6 | CH_han_949 | 3 | 3 | 0.000177133 |
| Lupinus albus | Lalb_Chr10 | 6 | CH_lal_654 | 3 | 3 | 0.000379626 |
| Medicago truncatula | chr8 | 6 | CH_mtr_1205 | 3 | 4 | 0.000265509 |
| Medicago truncatula | chr1 | 6 | CH_mtr_534 | 4 | 4 | 0.0000000709683 |
| Prunus persica | Pp07 | 6 | CH_ppe_566 | 4 | 10 | 0.0000647966 |
| Papaver somniferum | NW_020619603.1 | 6 | CH_pso_731 | 4 | 7 | 0.0000119784 |
| Phaseolus vulgaris | Chr03 | 6 | CH_pvu_487 | 3 | 3 | 0.000114906 |
| Quercus lobata | 8 | 6 | CH_qlo_416 | 6 | 7 | 0.00000000000288968 |
| Quercus lobata | 6 | 6 | CH_qlo_538 | 5 | 5 | 0.00000000029108 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1277 | 3 | 4 | 0.000342883 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_669 | 3 | 3 | 0.000167995 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_220 | 4 | 4 | 0.000000118935 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_72 | 6 | 8 | 0.00000000000599881 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_552 | 3 | 3 | 0.000269743 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_553 | 3 | 3 | 0.000269743 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |