Functional clusters
Information
- Type InterPro
- Description Cyclic nucleotide-binding domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_484 | 3 | 4 | 0.000156299 |
| Brassica napus | C01 | 5 | CH_bna_1181 | 4 | 19 | 0.000224482 |
| Brassica oleracea | C1 | 5 | CH_bol_648 | 4 | 24 | 0.000179627 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_872 | 3 | 3 | 0.0000266076 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_72 | 7 | 11 | 0.0000000000000208858 |
| Carya illinoinensis | Chr01 | 5 | CH_cil_162 | 6 | 8 | 0.00000000000406139 |
| Corchorus olitorius | AWUE01016496.1 | 5 | CH_col_86 | 3 | 3 | 0.00000448004 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_402 | 3 | 3 | 0.0000360458 |
| Davidia involucrata | GWHABJS00000010 | 5 | CH_din_421 | 3 | 3 | 0.0000224518 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_129 | 9 | 9 | 1.10148e-22 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_1375 | 3 | 5 | 0.000632973 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_391 | 6 | 8 | 0.00000000000263336 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_254 | 7 | 33 | 0.0000000105225 |
| Malus domestica | Chr07 | 5 | CH_mdo_114 | 8 | 18 | 0.0000000000000360236 |
| Malus domestica | Chr02 | 5 | CH_mdo_1339 | 3 | 4 | 0.00065569 |
| Petunia axillaris | Peaxi162Scf00017 | 5 | CH_pax_493 | 3 | 4 | 0.000108448 |
| Quercus lobata | 11 | 5 | CH_qlo_30 | 19 | 50 | 5.70095e-37 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_610 | 3 | 3 | 0.0000280781 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_2508 | 3 | 8 | 0.000581753 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_740 | 5 | 11 | 0.00000000157119 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_484 | 3 | 4 | 0.000156299 |
| Brassica napus | C01 | 6 | CH_bna_1181 | 4 | 19 | 0.000224482 |
| Brassica oleracea | C1 | 6 | CH_bol_648 | 4 | 24 | 0.000179627 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_872 | 3 | 3 | 0.0000266076 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_72 | 7 | 11 | 0.0000000000000208858 |
| Carya illinoinensis | Chr01 | 6 | CH_cil_162 | 6 | 8 | 0.00000000000406139 |
| Corchorus olitorius | AWUE01016496.1 | 6 | CH_col_86 | 3 | 3 | 0.00000448004 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_402 | 3 | 3 | 0.0000360458 |
| Davidia involucrata | GWHABJS00000010 | 6 | CH_din_421 | 3 | 3 | 0.0000224518 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_129 | 9 | 9 | 1.10148e-22 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_1375 | 3 | 5 | 0.000632973 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_391 | 6 | 8 | 0.00000000000263336 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_1122 | 3 | 3 | 0.00057787 |
| Fragaria x ananassa | Fvb7-3 | 6 | CH_fan_320 | 5 | 8 | 0.0000000959344 |
| Fragaria x ananassa | Fvb7-1 | 6 | CH_fan_852 | 4 | 9 | 0.000125102 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_254 | 7 | 33 | 0.0000000105225 |
| Malus domestica | Chr07 | 6 | CH_mdo_114 | 8 | 18 | 0.0000000000000360236 |
| Malus domestica | Chr02 | 6 | CH_mdo_1339 | 3 | 4 | 0.00065569 |
| Petunia axillaris | Peaxi162Scf00017 | 6 | CH_pax_493 | 3 | 4 | 0.000108448 |
| Quercus lobata | 11 | 6 | CH_qlo_30 | 19 | 50 | 5.70095e-37 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_610 | 3 | 3 | 0.0000280781 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_2508 | 3 | 8 | 0.000581753 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_740 | 5 | 11 | 0.00000000157119 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |