Functional clusters
Information
- Type InterPro
- Description HECT domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 5 | CH_arhy_327 | 6 | 23 | 0.000000000126128 |
| Brassica carinata | Contig1189 | 5 | CH_bca_883 | 3 | 3 | 0.00000278287 |
| Brassica napus | A09 | 5 | CH_bna_857 | 3 | 6 | 0.0000182972 |
| Brassica oleracea | C9 | 5 | CH_bol_179 | 4 | 7 | 0.00000000667033 |
| Brassica rapa | A09 | 5 | CH_bra_300 | 3 | 6 | 0.0000158055 |
| Daucus carota | DCARv2_Chr9 | 5 | CH_dca_80 | 5 | 6 | 0.00000000000637797 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_343 | 3 | 3 | 0.0000010994 |
| Manihot esculenta | Chromosome07 | 5 | CH_mes_484 | 3 | 4 | 0.0000581371 |
| Medicago truncatula | chr2 | 5 | CH_mtr_388 | 4 | 5 | 0.00000000141989 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_687 | 4 | 4 | 0.000000000347199 |
| Solanum tuberosum | ST4.03ch09 | 5 | CH_stu_445 | 3 | 3 | 0.00000267867 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 6 | CH_arhy_327 | 6 | 23 | 0.000000000126128 |
| Brassica carinata | Contig1189 | 6 | CH_bca_883 | 3 | 3 | 0.00000278287 |
| Brassica napus | A09 | 6 | CH_bna_857 | 3 | 6 | 0.0000182972 |
| Brassica oleracea | C9 | 6 | CH_bol_179 | 4 | 7 | 0.00000000667033 |
| Brassica rapa | A09 | 6 | CH_bra_300 | 3 | 6 | 0.0000158055 |
| Daucus carota | DCARv2_Chr9 | 6 | CH_dca_80 | 5 | 6 | 0.00000000000637797 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_343 | 3 | 3 | 0.0000010994 |
| Manihot esculenta | Chromosome07 | 6 | CH_mes_484 | 3 | 4 | 0.0000581371 |
| Medicago truncatula | chr2 | 6 | CH_mtr_388 | 4 | 5 | 0.00000000141989 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_687 | 4 | 4 | 0.000000000347199 |
| Solanum tuberosum | ST4.03ch09 | 6 | CH_stu_445 | 3 | 3 | 0.00000267867 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |