Functional clusters
Information
- Type InterPro
- Description Regulator of chromosome condensation, RCC1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 5 | CH_arhy_1078 | 3 | 5 | 0.000279677 |
| Brassica napus | C03 | 5 | CH_bna_1120 | 3 | 4 | 0.000163386 |
| Brassica oleracea | C3 | 5 | CH_bol_801 | 3 | 7 | 0.000511679 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_1111 | 3 | 5 | 0.000141632 |
| Coffea canephora | chr8 | 5 | CH_ccan_716 | 2 | 2 | 0.000894371 |
| Hydrangea macrophylla | Hma1.2p1_0073F.1 | 5 | CH_hma_217 | 3 | 3 | 0.0000103663 |
| Hydrangea macrophylla | Hma1.2p1_0148F.1 | 5 | CH_hma_72 | 4 | 4 | 0.00000000748597 |
| Quercus lobata | 4 | 5 | CH_qlo_1637 | 3 | 8 | 0.000452218 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_603 | 4 | 8 | 0.000000198621 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_867 | 4 | 4 | 0.00000000823809 |
| Selaginella moellendorffii | scaffold_0 | 5 | CH_smo_40 | 6 | 15 | 0.000000000106875 |
| Vigna mungo | CM024074.1 | 5 | CH_vmu_143 | 4 | 4 | 0.0000000291048 |
| Vanilla planifolia | CM028159.1 | 5 | CH_vpl_278 | 3 | 3 | 0.00000933598 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 6 | CH_arhy_1078 | 3 | 5 | 0.000279677 |
| Brassica napus | C03 | 6 | CH_bna_1120 | 3 | 4 | 0.000163386 |
| Brassica oleracea | C3 | 6 | CH_bol_801 | 3 | 7 | 0.000511679 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_1111 | 3 | 5 | 0.000141632 |
| Coffea canephora | chr8 | 6 | CH_ccan_716 | 2 | 2 | 0.000894371 |
| Fragaria x ananassa | Fvb1-4 | 6 | CH_fan_979 | 3 | 5 | 0.000306 |
| Hydrangea macrophylla | Hma1.2p1_0073F.1 | 6 | CH_hma_217 | 3 | 3 | 0.0000103663 |
| Hydrangea macrophylla | Hma1.2p1_0148F.1 | 6 | CH_hma_72 | 4 | 4 | 0.00000000748597 |
| Quercus lobata | 4 | 6 | CH_qlo_1637 | 3 | 8 | 0.000452218 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_603 | 4 | 8 | 0.000000198621 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_867 | 4 | 4 | 0.00000000823809 |
| Selaginella moellendorffii | scaffold_0 | 6 | CH_smo_40 | 6 | 15 | 0.000000000106875 |
| Vigna mungo | CM024074.1 | 6 | CH_vmu_143 | 4 | 4 | 0.0000000291048 |
| Vanilla planifolia | CM028159.1 | 6 | CH_vpl_278 | 3 | 3 | 0.00000933598 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |