Functional clusters
Information
- Type InterPro
- Description Small hydrophilic plant seed protein
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 5 | CH_acertr_735 | 2 | 2 | 0.000211491 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 5 | CH_arhy_613 | 3 | 4 | 0.000000887261 |
| Cannabis sativa | NC_044378.1 | 5 | CH_cansat_390 | 2 | 2 | 0.0000656642 |
| Chara braunii | BFEA01000333 | 5 | CH_cbr_337 | 2 | 5 | 0.000719192 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_631 | 2 | 2 | 0.000246093 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_1192 | 2 | 2 | 0.000175582 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_136 | 4 | 5 | 0.0000000000153337 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_1059 | 2 | 2 | 0.000386429 |
| Malus domestica | Chr00 | 5 | CH_mdo_1082 | 2 | 2 | 0.000227527 |
| Marchantia polymorpha | scaffold_105 | 5 | CH_mpo_71 | 3 | 3 | 0.000000182973 |
| Prunus persica | Pp06 | 5 | CH_ppe_676 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_429 | 2 | 2 | 0.0000521635 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_408 | 3 | 3 | 0.0000000266479 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_470 | 3 | 4 | 0.000000106587 |
| Quercus lobata | 7 | 5 | CH_qlo_1598 | 2 | 2 | 0.000309773 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_421 | 3 | 3 | 0.00000000238391 |
| Simmondsia chinensis | GWHAASQ00000007 | 5 | CH_sci_509 | 2 | 2 | 0.000851426 |
| Selaginella moellendorffii | scaffold_3 | 5 | CH_smo_269 | 2 | 2 | 0.000280112 |
| Theobroma cacao | Chromosome_10 | 5 | CH_tca_601 | 2 | 2 | 0.000219716 |
| Vitis vinifera | chr13 | 5 | CH_vvi_589 | 2 | 2 | 0.000228189 |
| Zea mays | 6 | 5 | CH_zma_376 | 2 | 3 | 0.00015339 |
| Acer truncatum | chr8 | 6 | CH_acertr_735 | 2 | 2 | 0.000211491 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 6 | CH_arhy_613 | 3 | 4 | 0.000000887261 |
| Cannabis sativa | NC_044378.1 | 6 | CH_cansat_390 | 2 | 2 | 0.0000656642 |
| Chara braunii | BFEA01000333 | 6 | CH_cbr_337 | 2 | 5 | 0.000719192 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_631 | 2 | 2 | 0.000246093 |
| Cucumis melo | chr08 | 6 | CH_cme_293 | 2 | 2 | 0.0000667111 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_1192 | 2 | 2 | 0.000175582 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_1151 | 2 | 2 | 0.00066613 |
| Fragaria x ananassa | Fvb6-1 | 6 | CH_fan_147 | 4 | 7 | 0.000000000035919 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_136 | 4 | 5 | 0.0000000000153337 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_1059 | 2 | 2 | 0.000386429 |
| Malus domestica | Chr00 | 6 | CH_mdo_1082 | 2 | 2 | 0.000227527 |
| Marchantia polymorpha | scaffold_105 | 6 | CH_mpo_71 | 3 | 3 | 0.000000182973 |
| Prunus persica | Pp06 | 6 | CH_ppe_676 | 2 | 2 | 0.000223789 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_429 | 2 | 2 | 0.0000521635 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_408 | 3 | 3 | 0.0000000266479 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_470 | 3 | 4 | 0.000000106587 |
| Quercus lobata | 7 | 6 | CH_qlo_1598 | 2 | 2 | 0.000309773 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_421 | 3 | 3 | 0.00000000238391 |
| Simmondsia chinensis | GWHAASQ00000007 | 6 | CH_sci_509 | 2 | 2 | 0.000851426 |
| Selaginella moellendorffii | scaffold_3 | 6 | CH_smo_269 | 2 | 2 | 0.000280112 |
| Theobroma cacao | Chromosome_10 | 6 | CH_tca_601 | 2 | 2 | 0.000219716 |
| Vitis vinifera | chr13 | 6 | CH_vvi_589 | 2 | 2 | 0.000228189 |
| Zea mays | 6 | 6 | CH_zma_376 | 2 | 3 | 0.00015339 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |