Functional clusters
Information
- Type InterPro
- Description Copper amine oxidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr4 | 5 | CH_acertr_413 | 3 | 4 | 0.00000491909 |
| Actinidia chinensis | Lachesis_group9 | 5 | CH_ach_284 | 3 | 7 | 0.0000563346 |
| Actinidia chinensis | Lachesis_group6 | 5 | CH_ach_55 | 4 | 4 | 0.000000000481393 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_643 | 3 | 3 | 0.0000015327 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_324 | 3 | 8 | 0.00000826984 |
| Amborella trichopoda | AmTr_v1.0_scaffold00012 | 5 | CH_atr_92 | 4 | 4 | 0.0000000000225629 |
| Brassica carinata | ChrC07 | 5 | CH_bca_738 | 3 | 3 | 0.000000911628 |
| Brassica napus | C02 | 5 | CH_bna_694 | 3 | 5 | 0.00000351354 |
| Brassica oleracea | C8 | 5 | CH_bol_284 | 3 | 3 | 0.000000352573 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 5 | CH_bvu_240 | 3 | 3 | 0.00000123386 |
| Capsicum annuum | PGAv.1.6.scaffold220 | 5 | CH_can_837 | 2 | 2 | 0.000826105 |
| Chara braunii | BFEA01000681 | 5 | CH_cbr_164 | 2 | 2 | 0.0000719269 |
| Coffea canephora | chr11 | 5 | CH_ccan_532 | 2 | 2 | 0.000191651 |
| Citrullus lanatus | CG_Chr06 | 5 | CH_cla_128 | 3 | 4 | 0.000000944273 |
| Corchorus olitorius | AWUE01018369.1 | 5 | CH_col_135 | 2 | 2 | 0.000292099 |
| Carica papaya | supercontig_58 | 5 | CH_cpa_171 | 3 | 3 | 0.000000474494 |
| Cucumis sativus L. | chr6 | 5 | CH_csa_207 | 3 | 3 | 0.000000365847 |
| Davidia involucrata | GWHABJS00000014 | 5 | CH_din_128 | 5 | 9 | 0.0000000000177403 |
| Davidia involucrata | GWHABJS00000016 | 5 | CH_din_410 | 3 | 5 | 0.0000170629 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_743 | 2 | 2 | 0.000448722 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_154 | 7 | 8 | 8.35883e-21 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_58 | 6 | 7 | 5.16338e-17 |
| Gossypium raimondii | Chr03 | 5 | CH_gra_326 | 3 | 4 | 0.00000284491 |
| Hydrangea macrophylla | Hma1.2p1_0745F.1 | 5 | CH_hma_161 | 3 | 3 | 0.000000370226 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_194 | 5 | 5 | 0.000000000000193173 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_561 | 3 | 3 | 0.00000195829 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_1133 | 2 | 2 | 0.000485661 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_411 | 3 | 4 | 0.000000141515 |
| Olea europaea | chr4 | 5 | CH_oeu_522 | 2 | 2 | 0.000320273 |
| Phaseolus vulgaris | Chr07 | 5 | CH_pvu_181 | 4 | 5 | 0.00000000425297 |
| Quercus lobata | 6 | 5 | CH_qlo_186 | 8 | 19 | 5.64792e-19 |
| Striga asiatica | scaffold39 | 5 | CH_sas_111 | 3 | 7 | 0.0000172357 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_299 | 3 | 3 | 0.000000108681 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1012 | 4 | 18 | 0.0000000371048 |
| Sapria himalayana | scaffold19_10581841 | 5 | CH_shi_25 | 5 | 11 | 0.000000000000222219 |
| Trochodendron aralioides | group0 | 5 | CH_tar_437 | 3 | 6 | 0.000017831 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_145 | 5 | 9 | 0.00000000000684793 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_461 | 3 | 6 | 0.0000192975 |
| Tripterygium wilfordii | NC_052245.1 | 5 | CH_twi_280 | 3 | 6 | 0.00000782913 |
| Utricularia gibba | unitig_744 | 5 | CH_ugi_361 | 2 | 2 | 0.000820479 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_105 | 5 | 21 | 0.000000013588 |
| Acer truncatum | chr4 | 6 | CH_acertr_413 | 3 | 4 | 0.00000491909 |
| Actinidia chinensis | Lachesis_group9 | 6 | CH_ach_284 | 3 | 7 | 0.0000563346 |
| Actinidia chinensis | Lachesis_group6 | 6 | CH_ach_55 | 4 | 4 | 0.000000000481393 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_643 | 3 | 3 | 0.0000015327 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_324 | 3 | 8 | 0.00000826984 |
| Amborella trichopoda | AmTr_v1.0_scaffold00012 | 6 | CH_atr_92 | 4 | 4 | 0.0000000000225629 |
| Brassica carinata | ChrC07 | 6 | CH_bca_738 | 3 | 3 | 0.000000911628 |
| Brassica napus | C02 | 6 | CH_bna_694 | 3 | 5 | 0.00000351354 |
| Brassica oleracea | C8 | 6 | CH_bol_284 | 3 | 3 | 0.000000352573 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 6 | CH_bvu_240 | 3 | 3 | 0.00000123386 |
| Capsicum annuum | PGAv.1.6.scaffold220 | 6 | CH_can_837 | 2 | 2 | 0.000826105 |
| Chara braunii | BFEA01000681 | 6 | CH_cbr_164 | 2 | 2 | 0.0000719269 |
| Coffea canephora | chr11 | 6 | CH_ccan_532 | 2 | 2 | 0.000191651 |
| Citrullus lanatus | CG_Chr06 | 6 | CH_cla_128 | 3 | 4 | 0.000000944273 |
| Cucumis melo | chr05 | 6 | CH_cme_162 | 3 | 3 | 0.000000133516 |
| Corchorus olitorius | AWUE01018369.1 | 6 | CH_col_135 | 2 | 2 | 0.000292099 |
| Carica papaya | supercontig_58 | 6 | CH_cpa_171 | 3 | 3 | 0.000000474494 |
| Cucumis sativus L. | chr6 | 6 | CH_csa_207 | 3 | 3 | 0.000000365847 |
| Davidia involucrata | GWHABJS00000014 | 6 | CH_din_128 | 5 | 9 | 0.0000000000177403 |
| Davidia involucrata | GWHABJS00000016 | 6 | CH_din_410 | 3 | 5 | 0.0000170629 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_743 | 2 | 2 | 0.000448722 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_154 | 7 | 8 | 8.35883e-21 |
| Fragaria x ananassa | Fvb4-4 | 6 | CH_fan_463 | 3 | 3 | 0.00000150222 |
| Fragaria x ananassa | Fvb4-3 | 6 | CH_fan_464 | 3 | 3 | 0.00000150222 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_58 | 6 | 7 | 5.16338e-17 |
| Gossypium raimondii | Chr03 | 6 | CH_gra_326 | 3 | 4 | 0.00000284491 |
| Hydrangea macrophylla | Hma1.2p1_0745F.1 | 6 | CH_hma_161 | 3 | 3 | 0.000000370226 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_194 | 5 | 5 | 0.000000000000193173 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_561 | 3 | 3 | 0.00000195829 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_1133 | 2 | 2 | 0.000485661 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_411 | 3 | 4 | 0.000000141515 |
| Olea europaea | chr4 | 6 | CH_oeu_522 | 2 | 2 | 0.000320273 |
| Phaseolus vulgaris | Chr07 | 6 | CH_pvu_181 | 4 | 5 | 0.00000000425297 |
| Quercus lobata | 6 | 6 | CH_qlo_186 | 8 | 19 | 5.64792e-19 |
| Striga asiatica | scaffold39 | 6 | CH_sas_111 | 3 | 7 | 0.0000172357 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_299 | 3 | 3 | 0.000000108681 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1012 | 4 | 18 | 0.0000000371048 |
| Sapria himalayana | scaffold19_10581841 | 6 | CH_shi_25 | 5 | 11 | 0.000000000000222219 |
| Trochodendron aralioides | group0 | 6 | CH_tar_437 | 3 | 6 | 0.000017831 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_145 | 5 | 9 | 0.00000000000684793 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_461 | 3 | 6 | 0.0000192975 |
| Tripterygium wilfordii | NC_052245.1 | 6 | CH_twi_280 | 3 | 6 | 0.00000782913 |
| Utricularia gibba | unitig_744 | 6 | CH_ugi_361 | 2 | 2 | 0.000820479 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_105 | 5 | 21 | 0.000000013588 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |