Functional clusters
Information
- Type InterPro
- Description Serpin family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 5 | CH_acertr_736 | 2 | 2 | 0.000211491 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 5 | CH_amhyb_212 | 2 | 2 | 0.0000841751 |
| Aquilegia oxysepala | CHR04 | 5 | CH_aox_189 | 4 | 13 | 0.000000788869 |
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_301 | 4 | 9 | 0.000000000546558 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_81 | 5 | 7 | 0.00000000000135254 |
| Cicer arietinum L. | Ca_LG5_v3 | 5 | CH_car_344 | 2 | 2 | 0.000466981 |
| Chara braunii | BFEA01000566 | 5 | CH_cbr_138 | 3 | 9 | 0.0000130285 |
| Coffea canephora | chr10 | 5 | CH_ccan_553 | 2 | 6 | 0.000255531 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_203 | 3 | 3 | 0.0000000344157 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_62 | 6 | 6 | 4.39486e-16 |
| Carya illinoinensis | Chr16 | 5 | CH_cil_641 | 2 | 3 | 0.000185943 |
| Citrullus lanatus | CG_Chr08 | 5 | CH_cla_204 | 2 | 2 | 0.0000887115 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 5 | CH_cqu_450 | 3 | 3 | 0.0000018859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1846 | 5 | CH_cqu_78 | 6 | 7 | 3.01219e-16 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_162 | 3 | 3 | 0.0000000418111 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_140 | 4 | 4 | 0.00000000377103 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 5 | CH_eca_29 | 7 | 10 | 2.64717e-19 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_584 | 3 | 3 | 0.00000000513834 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_13 | 13 | 17 | 4.50936e-38 |
| Erythranthe guttata | scaffold_6 | 5 | CH_egut_622 | 3 | 8 | 0.000248926 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_593 | 2 | 3 | 0.000482475 |
| Hydrangea macrophylla | Hma1.2p1_0017F.1 | 5 | CH_hma_113 | 5 | 27 | 0.0000000230962 |
| Hydrangea macrophylla | Hma1.2p1_0092F.1 | 5 | CH_hma_234 | 3 | 5 | 0.0000221982 |
| Lupinus albus | Lalb_Chr23 | 5 | CH_lal_153 | 3 | 3 | 0.0000000165269 |
| Lotus japonicus | chr1 | 5 | CH_lja_40 | 7 | 12 | 0.00000000000000984438 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_603 | 2 | 2 | 0.0000514007 |
| Marchantia polymorpha | scaffold_16 | 5 | CH_mpo_184 | 2 | 2 | 0.000331327 |
| Olea europaea | chr14 | 5 | CH_oeu_657 | 2 | 2 | 0.000800683 |
| Punica granatum | NC_045133.1 | 5 | CH_pgr_172 | 4 | 8 | 0.00000000620719 |
| Prunus persica | Pp05 | 5 | CH_ppe_125 | 5 | 5 | 0.0000000000000130081 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_432 | 2 | 2 | 0.0000521635 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_116 | 7 | 9 | 0.00000000000000107326 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_863 | 3 | 3 | 0.0000602082 |
| Quercus lobata | 5 | 5 | CH_qlo_1021 | 3 | 5 | 0.00000335772 |
| Quercus lobata | 9 | 5 | CH_qlo_491 | 4 | 4 | 0.000000000052024 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_330 | 6 | 31 | 0.0000000000449727 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_390 | 4 | 4 | 0.000000000736741 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_34 | 11 | 11 | 2.09243e-28 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_33 | 8 | 15 | 4.86627e-24 |
| Schrenkiella parvula | ch5-1 | 5 | CH_spa_320 | 2 | 2 | 0.000472404 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_39 | 6 | 12 | 3.61968e-18 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_24 | 9 | 19 | 6.23048e-27 |
| Theobroma cacao | Chromosome_8 | 5 | CH_tca_520 | 2 | 2 | 0.0000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_152 | 5 | CH_tpr_11 | 8 | 11 | 2.22304e-21 |
| Tripterygium wilfordii | NC_052252.1 | 5 | CH_twi_478 | 2 | 3 | 0.000501733 |
| Utricularia gibba | unitig_26 | 5 | CH_ugi_120 | 2 | 2 | 0.0000820479 |
| Acer truncatum | chr13 | 6 | CH_acertr_736 | 2 | 2 | 0.000211491 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 6 | CH_amhyb_212 | 2 | 2 | 0.0000841751 |
| Aquilegia oxysepala | CHR04 | 6 | CH_aox_189 | 4 | 13 | 0.000000788869 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_301 | 4 | 9 | 0.000000000546558 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_81 | 5 | 7 | 0.00000000000135254 |
| Cicer arietinum L. | Ca_LG5_v3 | 6 | CH_car_344 | 2 | 2 | 0.000466981 |
| Chara braunii | BFEA01000566 | 6 | CH_cbr_138 | 3 | 9 | 0.0000130285 |
| Coffea canephora | chr10 | 6 | CH_ccan_553 | 2 | 6 | 0.000255531 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_203 | 3 | 3 | 0.0000000344157 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_62 | 6 | 6 | 4.39486e-16 |
| Carya illinoinensis | Chr16 | 6 | CH_cil_641 | 2 | 3 | 0.000185943 |
| Citrullus lanatus | CG_Chr08 | 6 | CH_cla_204 | 2 | 2 | 0.0000887115 |
| Cucumis melo | chr03 | 6 | CH_cme_141 | 3 | 3 | 0.0000000267031 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 6 | CH_cqu_450 | 3 | 3 | 0.0000018859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1846 | 6 | CH_cqu_78 | 6 | 7 | 3.01219e-16 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_162 | 3 | 3 | 0.0000000418111 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_140 | 4 | 4 | 0.00000000377103 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 6 | CH_eca_29 | 7 | 10 | 2.64717e-19 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_584 | 3 | 3 | 0.00000000513834 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_13 | 13 | 17 | 4.50936e-38 |
| Erythranthe guttata | scaffold_6 | 6 | CH_egut_622 | 3 | 8 | 0.000248926 |
| Fragaria x ananassa | Fvb3-3 | 6 | CH_fan_287 | 4 | 5 | 0.0000000348908 |
| Fragaria x ananassa | Fvb5-1 | 6 | CH_fan_527 | 5 | 43 | 0.00000318387 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_593 | 2 | 3 | 0.000482475 |
| Hydrangea macrophylla | Hma1.2p1_0017F.1 | 6 | CH_hma_113 | 5 | 27 | 0.0000000230962 |
| Hydrangea macrophylla | Hma1.2p1_0092F.1 | 6 | CH_hma_234 | 3 | 5 | 0.0000221982 |
| Lupinus albus | Lalb_Chr23 | 6 | CH_lal_153 | 3 | 3 | 0.0000000165269 |
| Lotus japonicus | chr1 | 6 | CH_lja_40 | 7 | 12 | 0.00000000000000984438 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_603 | 2 | 2 | 0.0000514007 |
| Marchantia polymorpha | scaffold_16 | 6 | CH_mpo_184 | 2 | 2 | 0.000331327 |
| Olea europaea | chr14 | 6 | CH_oeu_657 | 2 | 2 | 0.000800683 |
| Punica granatum | NC_045133.1 | 6 | CH_pgr_172 | 4 | 8 | 0.00000000620719 |
| Prunus persica | Pp05 | 6 | CH_ppe_125 | 5 | 5 | 0.0000000000000130081 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_432 | 2 | 2 | 0.0000521635 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_116 | 7 | 9 | 0.00000000000000107326 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_863 | 3 | 3 | 0.0000602082 |
| Quercus lobata | 5 | 6 | CH_qlo_1021 | 3 | 5 | 0.00000335772 |
| Quercus lobata | 9 | 6 | CH_qlo_491 | 4 | 4 | 0.000000000052024 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_330 | 6 | 31 | 0.0000000000449727 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_390 | 4 | 4 | 0.000000000736741 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_34 | 11 | 11 | 2.09243e-28 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_33 | 8 | 15 | 4.86627e-24 |
| Schrenkiella parvula | ch5-1 | 6 | CH_spa_320 | 2 | 2 | 0.000472404 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_39 | 6 | 12 | 3.61968e-18 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_24 | 9 | 19 | 6.23048e-27 |
| Theobroma cacao | Chromosome_8 | 6 | CH_tca_520 | 2 | 2 | 0.0000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_152 | 6 | CH_tpr_11 | 8 | 11 | 2.22304e-21 |
| Tripterygium wilfordii | NC_052252.1 | 6 | CH_twi_478 | 2 | 3 | 0.000501733 |
| Utricularia gibba | unitig_26 | 6 | CH_ugi_120 | 2 | 2 | 0.0000820479 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |