Functional clusters
Information
- Type InterPro
- Description GNAT domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr4 | 5 | CH_acertr_267 | 4 | 4 | 0.0000000694255 |
| Aquilegia oxysepala | CHR02 | 5 | CH_aox_83 | 5 | 5 | 0.000000000379162 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 5 | CH_arhy_963 | 3 | 3 | 0.000102282 |
| Brassica carinata | ChrC07 | 5 | CH_bca_1861 | 4 | 24 | 0.000564423 |
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_862 | 4 | 11 | 0.0000218512 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_978 | 3 | 3 | 0.0000618195 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_219 | 4 | 5 | 0.000000222204 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 5 | CH_can_321 | 4 | 5 | 0.000000345742 |
| Capsicum annuum | PGAv.1.6.scaffold1094 | 5 | CH_can_639 | 3 | 4 | 0.000223199 |
| Citrus clementina | scaffold_9 | 5 | CH_ccl_342 | 4 | 5 | 0.000000433132 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_309 | 4 | 6 | 0.0000014438 |
| Daucus carota | DCARv2_Chr9 | 5 | CH_dca_108 | 5 | 5 | 0.000000000134787 |
| Davidia involucrata | GWHABJS00000014 | 5 | CH_din_485 | 3 | 3 | 0.0000648941 |
| Durio zibethinus | NW_019167904.1 | 5 | CH_dzi_389 | 3 | 3 | 0.000048916 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_777 | 4 | 6 | 0.000000417818 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_281 | 4 | 4 | 0.000000105858 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_527 | 3 | 3 | 0.0000785781 |
| Helianthus annuus | HanXRQChr02 | 5 | CH_han_1167 | 3 | 7 | 0.000772855 |
| Malus domestica | Chr12 | 5 | CH_mdo_1334 | 3 | 5 | 0.000597014 |
| Malus domestica | Chr16 | 5 | CH_mdo_865 | 3 | 3 | 0.0000597938 |
| Medicago truncatula | chr7 | 5 | CH_mtr_1131 | 3 | 4 | 0.000223671 |
| Medicago truncatula | chr5 | 5 | CH_mtr_351 | 5 | 6 | 0.00000000033304 |
| Nelumbo nucifera | chr6 | 5 | CH_nnu_105 | 5 | 6 | 0.000000000233038 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_429 | 3 | 3 | 0.0000228269 |
| Petunia axillaris | Peaxi162Scf00225 | 5 | CH_pax_253 | 4 | 6 | 0.000000640252 |
| Prunus persica | Pp01 | 5 | CH_ppe_323 | 4 | 4 | 0.0000000652109 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_639 | 3 | 5 | 0.000316706 |
| Quercus lobata | 6 | 5 | CH_qlo_590 | 5 | 8 | 0.0000000014948 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_135 | 7 | 7 | 2.32808e-17 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_653 | 3 | 3 | 0.0000570869 |
| Simmondsia chinensis | GWHAASQ00000006 | 5 | CH_sci_267 | 3 | 3 | 0.0000844938 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1521 | 3 | 3 | 0.0000254172 |
| Solanum lycopersicum | SL4.0ch09 | 5 | CH_sly_179 | 5 | 5 | 0.000000000152439 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_835 | 3 | 4 | 0.000357153 |
| Schrenkiella parvula | ch4-6 | 5 | CH_spa_222 | 3 | 3 | 0.0000722526 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_117 | 5 | 5 | 0.0000000000402439 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_574 | 3 | 3 | 0.0000450488 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_62 | 7 | 9 | 0.00000000000000117356 |
| Solanum tuberosum | ST4.03ch08 | 5 | CH_stu_112 | 7 | 9 | 0.00000000000000593441 |
| Solanum tuberosum | ST4.03ch09 | 5 | CH_stu_642 | 3 | 3 | 0.0000820342 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_806 | 3 | 4 | 0.000327826 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_807 | 3 | 4 | 0.000327826 |
| Trochodendron aralioides | group1 | 5 | CH_tar_572 | 3 | 3 | 0.0000935153 |
| Tripterygium wilfordii | NC_052244.1 | 5 | CH_twi_432 | 3 | 4 | 0.000229953 |
| Zea mays | 1 | 5 | CH_zma_324 | 3 | 3 | 0.0000483978 |
| Acer truncatum | chr4 | 6 | CH_acertr_267 | 4 | 4 | 0.0000000694255 |
| Aquilegia oxysepala | CHR02 | 6 | CH_aox_83 | 5 | 5 | 0.000000000379162 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 6 | CH_arhy_963 | 3 | 3 | 0.000102282 |
| Brassica carinata | ChrC07 | 6 | CH_bca_1861 | 4 | 24 | 0.000564423 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_862 | 4 | 11 | 0.0000218512 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_978 | 3 | 3 | 0.0000618195 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_219 | 4 | 5 | 0.000000222204 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 6 | CH_can_321 | 4 | 5 | 0.000000345742 |
| Capsicum annuum | PGAv.1.6.scaffold1094 | 6 | CH_can_639 | 3 | 4 | 0.000223199 |
| Citrus clementina | scaffold_9 | 6 | CH_ccl_342 | 4 | 5 | 0.000000433132 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_309 | 4 | 6 | 0.0000014438 |
| Daucus carota | DCARv2_Chr9 | 6 | CH_dca_108 | 5 | 5 | 0.000000000134787 |
| Davidia involucrata | GWHABJS00000014 | 6 | CH_din_485 | 3 | 3 | 0.0000648941 |
| Durio zibethinus | NW_019167904.1 | 6 | CH_dzi_389 | 3 | 3 | 0.000048916 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_777 | 4 | 6 | 0.000000417818 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_281 | 4 | 4 | 0.000000105858 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_527 | 3 | 3 | 0.0000785781 |
| Helianthus annuus | HanXRQChr02 | 6 | CH_han_1167 | 3 | 7 | 0.000772855 |
| Malus domestica | Chr12 | 6 | CH_mdo_1334 | 3 | 5 | 0.000597014 |
| Malus domestica | Chr16 | 6 | CH_mdo_865 | 3 | 3 | 0.0000597938 |
| Medicago truncatula | chr7 | 6 | CH_mtr_1131 | 3 | 4 | 0.000223671 |
| Medicago truncatula | chr5 | 6 | CH_mtr_351 | 5 | 6 | 0.00000000033304 |
| Nelumbo nucifera | chr6 | 6 | CH_nnu_105 | 5 | 6 | 0.000000000233038 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_429 | 3 | 3 | 0.0000228269 |
| Petunia axillaris | Peaxi162Scf00225 | 6 | CH_pax_253 | 4 | 6 | 0.000000640252 |
| Prunus persica | Pp01 | 6 | CH_ppe_323 | 4 | 4 | 0.0000000652109 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_639 | 3 | 5 | 0.000316706 |
| Quercus lobata | 6 | 6 | CH_qlo_590 | 5 | 8 | 0.0000000014948 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_135 | 7 | 7 | 2.32808e-17 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_653 | 3 | 3 | 0.0000570869 |
| Simmondsia chinensis | GWHAASQ00000006 | 6 | CH_sci_267 | 3 | 3 | 0.0000844938 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1521 | 3 | 3 | 0.0000254172 |
| Solanum lycopersicum | SL4.0ch09 | 6 | CH_sly_179 | 5 | 5 | 0.000000000152439 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_835 | 3 | 4 | 0.000357153 |
| Schrenkiella parvula | ch4-6 | 6 | CH_spa_222 | 3 | 3 | 0.0000722526 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_117 | 5 | 5 | 0.0000000000402439 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_574 | 3 | 3 | 0.0000450488 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_62 | 7 | 9 | 0.00000000000000117356 |
| Solanum tuberosum | ST4.03ch08 | 6 | CH_stu_112 | 7 | 9 | 0.00000000000000593441 |
| Solanum tuberosum | ST4.03ch09 | 6 | CH_stu_642 | 3 | 3 | 0.0000820342 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_806 | 3 | 4 | 0.000327826 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_807 | 3 | 4 | 0.000327826 |
| Trochodendron aralioides | group1 | 6 | CH_tar_572 | 3 | 3 | 0.0000935153 |
| Tripterygium wilfordii | NC_052244.1 | 6 | CH_twi_432 | 3 | 4 | 0.000229953 |
| Zea mays | 1 | 6 | CH_zma_324 | 3 | 3 | 0.0000483978 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |