Functional clusters
Information
- Type InterPro
- Description Glucose-methanol-choline oxidoreductase, N-terminal
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00028 | 5 | CH_atr_118 | 4 | 4 | 0.00000000031588 |
| Brassica carinata | ChrC01 | 5 | CH_bca_1172 | 3 | 4 | 0.0000270801 |
| Brassica carinata | ChrB05 | 5 | CH_bca_2072 | 3 | 10 | 0.000810905 |
| Brassica napus | A09 | 5 | CH_bna_1007 | 3 | 5 | 0.0000592962 |
| Brassica napus | C08 | 5 | CH_bna_750 | 3 | 3 | 0.00000593295 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_966 | 3 | 7 | 0.0000501823 |
| Citrullus lanatus | CG_Chr11 | 5 | CH_cla_16 | 7 | 13 | 0.00000000000000127845 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_114 | 4 | 4 | 0.000000000947293 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_400 | 6 | 41 | 0.000000032792 |
| Helianthus annuus | HanXRQChr09 | 5 | CH_han_545 | 4 | 8 | 0.00000110497 |
| Malus domestica | Chr13 | 5 | CH_mdo_429 | 4 | 6 | 0.0000000582396 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_454 | 3 | 9 | 0.0000386227 |
| Prunus persica | Pp01 | 5 | CH_ppe_14 | 13 | 17 | 1.11784e-33 |
| Salvia bowleyana | GWHASIU00000008 | 5 | CH_sbo_111 | 6 | 10 | 0.00000000000000460809 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_13 | 19 | 21 | 6.92165e-49 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_38 | 15 | 16 | 3.82319e-38 |
| Solanum lycopersicum | SL4.0ch08 | 5 | CH_sly_373 | 3 | 3 | 0.000000852661 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_379 | 3 | 4 | 0.00000195834 |
| Trochodendron aralioides | group1 | 5 | CH_tar_384 | 3 | 4 | 0.00000356771 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_146 | 5 | 7 | 0.00000000000906839 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_125 | 4 | 4 | 0.00000000172135 |
| Amborella trichopoda | AmTr_v1.0_scaffold00028 | 6 | CH_atr_118 | 4 | 4 | 0.00000000031588 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1172 | 3 | 4 | 0.0000270801 |
| Brassica carinata | ChrB05 | 6 | CH_bca_2072 | 3 | 10 | 0.000810905 |
| Brassica napus | A09 | 6 | CH_bna_1007 | 3 | 5 | 0.0000592962 |
| Brassica napus | C08 | 6 | CH_bna_750 | 3 | 3 | 0.00000593295 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_966 | 3 | 7 | 0.0000501823 |
| Citrullus lanatus | CG_Chr11 | 6 | CH_cla_16 | 7 | 13 | 0.00000000000000127845 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_114 | 4 | 4 | 0.000000000947293 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_400 | 6 | 41 | 0.000000032792 |
| Helianthus annuus | HanXRQChr09 | 6 | CH_han_545 | 4 | 8 | 0.00000110497 |
| Malus domestica | Chr13 | 6 | CH_mdo_429 | 4 | 6 | 0.0000000582396 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_454 | 3 | 9 | 0.0000386227 |
| Prunus persica | Pp01 | 6 | CH_ppe_14 | 13 | 17 | 1.11784e-33 |
| Salvia bowleyana | GWHASIU00000008 | 6 | CH_sbo_111 | 6 | 10 | 0.00000000000000460809 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_13 | 19 | 21 | 6.92165e-49 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_38 | 15 | 16 | 3.82319e-38 |
| Solanum lycopersicum | SL4.0ch08 | 6 | CH_sly_373 | 3 | 3 | 0.000000852661 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_379 | 3 | 4 | 0.00000195834 |
| Trochodendron aralioides | group1 | 6 | CH_tar_384 | 3 | 4 | 0.00000356771 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_146 | 5 | 7 | 0.00000000000906839 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_125 | 4 | 4 | 0.00000000172135 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |