Functional clusters
Information
- Type InterPro
- Description Dehydrin
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 5 | CH_acertr_58 | 8 | 36 | 0.0000000000000168965 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_277 | 3 | 3 | 0.000000784211 |
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_548 | 2 | 2 | 0.000801989 |
| Brassica carinata | ChrC07 | 5 | CH_bca_1066 | 3 | 6 | 0.0000111819 |
| Capsicum annuum | PGAv.1.6.scaffold358 | 5 | CH_can_772 | 2 | 2 | 0.000495663 |
| Carpinus fangiana | Cfa05 | 5 | CH_cfa_222 | 3 | 3 | 0.0000000860393 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_675 | 2 | 2 | 0.000637775 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 5 | CH_eca_299 | 3 | 3 | 0.000000362441 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_1399 | 2 | 2 | 0.000877912 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_420 | 3 | 6 | 0.00000208171 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_62 | 7 | 9 | 3.36436e-19 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_638 | 3 | 8 | 0.000100851 |
| Malus domestica | Chr02 | 5 | CH_mdo_104 | 5 | 5 | 0.0000000000000122846 |
| Nicotiana tabacum | Nitab4.5_0000723 | 5 | CH_nta_306 | 2 | 2 | 0.000658364 |
| Oryza sativa ssp. japonica | chr11 | 5 | CH_osa_89 | 5 | 9 | 0.000000000000154361 |
| Prunus persica | Pp07 | 5 | CH_ppe_347 | 3 | 3 | 0.000000166944 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_96 | 4 | 5 | 0.0000000000319365 |
| Quercus lobata | 11 | 5 | CH_qlo_1388 | 3 | 15 | 0.000152559 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_655 | 3 | 5 | 0.000000476719 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_207 | 6 | 6 | 4.32221e-20 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_794 | 2 | 2 | 0.000352164 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_787 | 2 | 2 | 0.00044479 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_902 | 2 | 2 | 0.000768679 |
| Trochodendron aralioides | group11 | 5 | CH_tar_940 | 2 | 2 | 0.000900549 |
| Zea mays | 8 | 5 | CH_zma_195 | 4 | 22 | 0.000000368808 |
| Acer truncatum | chr3 | 6 | CH_acertr_58 | 8 | 36 | 0.0000000000000168965 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_277 | 3 | 3 | 0.000000784211 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_548 | 2 | 2 | 0.000801989 |
| Brassica carinata | ChrC07 | 6 | CH_bca_1066 | 3 | 6 | 0.0000111819 |
| Capsicum annuum | PGAv.1.6.scaffold358 | 6 | CH_can_772 | 2 | 2 | 0.000495663 |
| Carpinus fangiana | Cfa05 | 6 | CH_cfa_222 | 3 | 3 | 0.0000000860393 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_675 | 2 | 2 | 0.000637775 |
| Erigeron canadensis | Conyza_canadensis_scaffold:8 | 6 | CH_eca_299 | 3 | 3 | 0.000000362441 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_1399 | 2 | 2 | 0.000877912 |
| Fragaria x ananassa | Fvb1-3 | 6 | CH_fan_415 | 3 | 3 | 0.000000683062 |
| Fragaria x ananassa | Fvb1-4 | 6 | CH_fan_740 | 3 | 8 | 0.0000382258 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_420 | 3 | 6 | 0.00000208171 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_62 | 7 | 9 | 3.36436e-19 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_638 | 3 | 8 | 0.000100851 |
| Malus domestica | Chr02 | 6 | CH_mdo_104 | 5 | 5 | 0.0000000000000122846 |
| Nicotiana tabacum | Nitab4.5_0000723 | 6 | CH_nta_306 | 2 | 2 | 0.000658364 |
| Oryza sativa ssp. japonica | chr11 | 6 | CH_osa_89 | 5 | 9 | 0.000000000000154361 |
| Prunus persica | Pp07 | 6 | CH_ppe_347 | 3 | 3 | 0.000000166944 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_96 | 4 | 5 | 0.0000000000319365 |
| Quercus lobata | 11 | 6 | CH_qlo_1388 | 3 | 15 | 0.000152559 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_655 | 3 | 5 | 0.000000476719 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_207 | 6 | 6 | 4.32221e-20 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_794 | 2 | 2 | 0.000352164 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_787 | 2 | 2 | 0.00044479 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_902 | 2 | 2 | 0.000768679 |
| Trochodendron aralioides | group11 | 6 | CH_tar_940 | 2 | 2 | 0.000900549 |
| Zea mays | 8 | 6 | CH_zma_195 | 4 | 22 | 0.000000368808 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |