Functional clusters
Information
- Type InterPro
- Description Polyprenyl synthetase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 5 | CH_aar_246 | 3 | 6 | 0.0000299399 |
| Acer truncatum | chr1 | 5 | CH_acertr_340 | 4 | 13 | 0.000000535995 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_409 | 3 | 5 | 0.0000444049 |
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_280 | 3 | 5 | 0.0000212128 |
| Brassica carinata | ChrB04 | 5 | CH_bca_547 | 4 | 8 | 0.000000120697 |
| Capsicum annuum | PGAv.1.6.scaffold358 | 5 | CH_can_390 | 3 | 3 | 0.00000225218 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_174 | 5 | 8 | 0.0000000000570593 |
| Citrus clementina | scaffold_5 | 5 | CH_ccl_567 | 3 | 6 | 0.000091743 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_371 | 3 | 3 | 0.00000487336 |
| Eutrema salsugineum | scaffold_13 | 5 | CH_esa_234 | 3 | 3 | 0.00000316627 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_204 | 5 | 5 | 0.000000000000647834 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_386 | 3 | 4 | 0.0000196522 |
| Punica granatum | NC_045129.1 | 5 | CH_pgr_119 | 5 | 12 | 0.0000000000868784 |
| Populus trichocarpa | Chr11 | 5 | CH_ptr_571 | 3 | 6 | 0.000098102 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_539 | 4 | 36 | 0.000120399 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1454 | 3 | 4 | 0.00000968004 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_332 | 6 | 8 | 0.00000000000000213858 |
| Sapria himalayana | scaffold55_3650763 | 5 | CH_shi_418 | 2 | 2 | 0.000171541 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_385 | 3 | 3 | 0.00000113688 |
| Schrenkiella parvula | ch3-1 | 5 | CH_spa_164 | 3 | 3 | 0.00000338481 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_338 | 3 | 3 | 0.000000652882 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_390 | 3 | 3 | 0.000000649971 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_433 | 3 | 4 | 0.00000707859 |
| Tarenaya hassleriana | NW_010966274.1 | 5 | CH_tha_152 | 3 | 3 | 0.00000332977 |
| Tripterygium wilfordii | NC_052249.1 | 5 | CH_twi_292 | 3 | 3 | 0.0000107234 |
| Tripterygium wilfordii | NC_052244.1 | 5 | CH_twi_94 | 5 | 8 | 0.000000000215288 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_305 | 3 | 3 | 0.00000370452 |
| Aethionema arabicum | LG-8 | 6 | CH_aar_246 | 3 | 6 | 0.0000299399 |
| Acer truncatum | chr1 | 6 | CH_acertr_340 | 4 | 13 | 0.000000535995 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_409 | 3 | 5 | 0.0000444049 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_280 | 3 | 5 | 0.0000212128 |
| Brassica carinata | ChrB04 | 6 | CH_bca_547 | 4 | 8 | 0.000000120697 |
| Capsicum annuum | PGAv.1.6.scaffold358 | 6 | CH_can_390 | 3 | 3 | 0.00000225218 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_174 | 5 | 8 | 0.0000000000570593 |
| Citrus clementina | scaffold_5 | 6 | CH_ccl_567 | 3 | 6 | 0.000091743 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_371 | 3 | 3 | 0.00000487336 |
| Eutrema salsugineum | scaffold_13 | 6 | CH_esa_234 | 3 | 3 | 0.00000316627 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_204 | 5 | 5 | 0.000000000000647834 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_386 | 3 | 4 | 0.0000196522 |
| Punica granatum | NC_045129.1 | 6 | CH_pgr_119 | 5 | 12 | 0.0000000000868784 |
| Populus trichocarpa | Chr11 | 6 | CH_ptr_571 | 3 | 6 | 0.000098102 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_539 | 4 | 36 | 0.000120399 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1454 | 3 | 4 | 0.00000968004 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_332 | 6 | 8 | 0.00000000000000213858 |
| Sapria himalayana | scaffold55_3650763 | 6 | CH_shi_418 | 2 | 2 | 0.000171541 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_385 | 3 | 3 | 0.00000113688 |
| Schrenkiella parvula | ch3-1 | 6 | CH_spa_164 | 3 | 3 | 0.00000338481 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_338 | 3 | 3 | 0.000000652882 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_390 | 3 | 3 | 0.000000649971 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_433 | 3 | 4 | 0.00000707859 |
| Tarenaya hassleriana | NW_010966274.1 | 6 | CH_tha_152 | 3 | 3 | 0.00000332977 |
| Tripterygium wilfordii | NC_052249.1 | 6 | CH_twi_292 | 3 | 3 | 0.0000107234 |
| Tripterygium wilfordii | NC_052244.1 | 6 | CH_twi_94 | 5 | 8 | 0.000000000215288 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_305 | 3 | 3 | 0.00000370452 |
Available child term results
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |