Functional clusters

Information

  • Type Gene Ontology
  • Description polygalacturonase inhibitor activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_6 3 CH_aly_238 2 3 0.000198007
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 3 CH_amhyb_9 6 8 7.4559e-17
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 3 CH_arhy_523 2 4 0.000179625
Arabidopsis thaliana Chr5 3 CH_ath_349 2 2 0.0000286492
Amborella trichopoda AmTr_v1.0_scaffold00022 3 CH_atr_243 2 3 0.000238313
Brassica carinata ChrB01 3 CH_bca_282 3 8 0.000000383792
Brassica napus A03 3 CH_bna_195 3 5 0.000000180869
Brassica napus C03 3 CH_bna_572 2 2 0.000389795
Brassica oleracea C3 3 CH_bol_284 2 2 0.0000980584
Brassica rapa A03 3 CH_bra_28 4 4 0.00000000000356094
Camellia sinensis var. sinensis Chr6 3 CH_camsi_443 3 15 0.0000143411
Camellia sinensis var. sinensis Chr13 3 CH_camsi_759 2 2 0.000458547
Cannabis sativa NC_044379.1 3 CH_cansat_14 8 20 2.08933e-22
Cicer arietinum L. Ca_LG3_v3 3 CH_car_121 2 2 0.0000778301
Coffea canephora chr6 3 CH_ccan_21 4 26 0.00000000000325836
Citrullus lanatus CG_Chr04 3 CH_cla_128 2 3 0.000266123
Capsella rubella scaffold_6 3 CH_cru_113 3 5 0.0000000801851
Daucus carota DCARv2_Chr5 3 CH_dca_348 2 2 0.000382665
Daucus carota DCARv2_Chr4 3 CH_dca_349 2 2 0.000382665
Eucalyptus grandis Chr01 3 CH_egr_276 4 7 0.0000000000210508
Erythranthe guttata scaffold_10 3 CH_egut_35 6 6 4.25703e-17
Erythranthe guttata scaffold_9 3 CH_egut_97 4 4 0.000000000573364
Eutrema salsugineum scaffold_2 3 CH_esa_157 2 2 0.0000761499
Fragaria x ananassa Fvb6-4 3 CH_fan_416 2 2 0.000185036
Fragaria vesca Fvb6 3 CH_fve_286 2 3 0.000176725
Glycine max Gm15 3 CH_gma_339 2 2 0.000113867
Lotus japonicus chr1 3 CH_lja_37 4 5 0.00000000000548506
Lactuca sativa Lsat_1_v8_lg_9 3 CH_lsa_386 2 2 0.000154202
Medicago truncatula chr7 3 CH_mtr_624 2 2 0.000246518
Nelumbo nucifera chr7 3 CH_nnu_157 3 3 0.0000114017
Nelumbo nucifera chr7 3 CH_nnu_178 3 4 0.0000455851
Nelumbo nucifera chr2 3 CH_nnu_2 19 32 2.17098e-51
Oryza sativa ssp. japonica chr05 3 CH_osa_68 4 5 0.0000000000773319
Petunia axillaris Peaxi162Scf00285 3 CH_pax_9 6 7 2.71589e-19
Papaver somniferum NC_039364.1 3 CH_pso_178 4 10 0.00000000237642
Populus trichocarpa Chr06 3 CH_ptr_398 2 2 0.000346801
Rosa chinensis RcHm_v2.0_Chr3 3 CH_rch_502 2 2 0.0000398653
Rhododendron simsii chr03 3 CH_rsi_63 5 6 7.80455e-16
Salvia bowleyana GWHASIU00000002 3 CH_sbo_98 4 5 0.0000000000211915
Salix brachista GWHAAZH00000006 3 CH_sbr_295 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000019 3 CH_sci_48 3 3 0.0000000434974
Sechium edule LG14 3 CH_sed_9 7 10 1.24649e-21
Schrenkiella parvula ch6-6 3 CH_spa_124 2 2 0.000078734
Trochodendron aralioides group7 3 CH_tar_327 2 3 0.000180104
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_86 3 3 0.0000000129529
Vigna mungo CM024072.1 3 CH_vmu_297 2 3 0.000581496
Arabidopsis lyrata scaffold_6 4 CH_aly_238 2 3 0.000198007
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 4 CH_amhyb_9 6 8 7.4559e-17
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 4 CH_arhy_523 2 4 0.000179625
Arabidopsis thaliana Chr5 4 CH_ath_349 2 2 0.0000286492
Amborella trichopoda AmTr_v1.0_scaffold00022 4 CH_atr_243 2 3 0.000238313
Brassica carinata ChrB01 4 CH_bca_282 3 8 0.000000383792
Brassica napus A03 4 CH_bna_195 3 5 0.000000180869
Brassica napus C03 4 CH_bna_572 2 2 0.000389795
Brassica oleracea C3 4 CH_bol_284 2 2 0.0000980584
Brassica rapa A03 4 CH_bra_28 4 4 0.00000000000356094
Camellia sinensis var. sinensis Chr6 4 CH_camsi_443 3 15 0.0000143411
Camellia sinensis var. sinensis Chr13 4 CH_camsi_759 2 2 0.000458547
Cannabis sativa NC_044379.1 4 CH_cansat_14 8 20 2.08933e-22
Cicer arietinum L. Ca_LG3_v3 4 CH_car_121 2 2 0.0000778301
Coffea canephora chr6 4 CH_ccan_21 4 26 0.00000000000325836
Citrullus lanatus CG_Chr04 4 CH_cla_128 2 3 0.000266123
Capsella rubella scaffold_6 4 CH_cru_113 3 5 0.0000000801851
Daucus carota DCARv2_Chr5 4 CH_dca_348 2 2 0.000382665
Daucus carota DCARv2_Chr4 4 CH_dca_349 2 2 0.000382665
Eucalyptus grandis Chr01 4 CH_egr_276 4 7 0.0000000000210508
Erythranthe guttata scaffold_10 4 CH_egut_35 6 6 4.25703e-17
Erythranthe guttata scaffold_9 4 CH_egut_97 4 4 0.000000000573364
Eutrema salsugineum scaffold_2 4 CH_esa_157 2 2 0.0000761499
Fragaria x ananassa Fvb6-4 4 CH_fan_416 2 2 0.000185036
Fragaria vesca Fvb6 4 CH_fve_286 2 3 0.000176725
Glycine max Gm15 4 CH_gma_339 2 2 0.000113867
Lotus japonicus chr1 4 CH_lja_37 4 5 0.00000000000548506
Lactuca sativa Lsat_1_v8_lg_9 4 CH_lsa_386 2 2 0.000154202
Medicago truncatula chr7 4 CH_mtr_624 2 2 0.000246518
Nelumbo nucifera chr7 4 CH_nnu_157 3 3 0.0000114017
Nelumbo nucifera chr7 4 CH_nnu_178 3 4 0.0000455851
Nelumbo nucifera chr2 4 CH_nnu_2 19 32 2.17098e-51
Oryza sativa ssp. japonica chr05 4 CH_osa_68 4 5 0.0000000000773319
Petunia axillaris Peaxi162Scf00285 4 CH_pax_9 6 7 2.71589e-19
Papaver somniferum NC_039364.1 4 CH_pso_178 4 10 0.00000000237642
Populus trichocarpa Chr06 4 CH_ptr_398 2 2 0.000346801
Rosa chinensis RcHm_v2.0_Chr3 4 CH_rch_502 2 2 0.0000398653
Rhododendron simsii chr03 4 CH_rsi_63 5 6 7.80455e-16
Salvia bowleyana GWHASIU00000002 4 CH_sbo_98 4 5 0.0000000000211915
Salix brachista GWHAAZH00000006 4 CH_sbr_295 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000019 4 CH_sci_48 3 3 0.0000000434974
Sechium edule LG14 4 CH_sed_9 7 10 1.24649e-21
Schrenkiella parvula ch6-6 4 CH_spa_124 2 2 0.000078734
Trochodendron aralioides group7 4 CH_tar_327 2 3 0.000180104
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_86 3 3 0.0000000129529
Vigna mungo CM024072.1 4 CH_vmu_297 2 3 0.000581496

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001