Functional clusters
Information
- Type Gene Ontology
- Description nucleosome-dependent ATPase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Capsicum annuum | PGAv.1.6.scaffold198 | 3 | CH_can_348 | 3 | 4 | 0.000166106 |
| Magnolia biondii | Chr13 | 3 | CH_mbi_382 | 3 | 3 | 0.0000323345 |
| Medicago truncatula | chr8 | 3 | CH_mtr_508 | 3 | 3 | 0.0000527327 |
| Populus trichocarpa | Chr16 | 3 | CH_ptr_197 | 4 | 4 | 0.00000016965 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_249 | 6 | 39 | 0.0000000379764 |
| Salix brachista | GWHAAZH00000016 | 3 | CH_sbr_252 | 3 | 3 | 0.0000788856 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_903 | 3 | 3 | 0.0000276599 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_904 | 3 | 3 | 0.0000276599 |
| Solanum lycopersicum | SL4.0ch07 | 3 | CH_sly_77 | 7 | 14 | 0.00000000000761484 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_106 | 5 | 8 | 0.00000000570317 |
| Solanum pennellii | Spenn-ch07 | 3 | CH_spe_127 | 6 | 28 | 0.0000000418985 |
| Solanum tuberosum | ST4.03ch07 | 3 | CH_stu_57 | 7 | 10 | 0.00000000000000114903 |
| Vanilla planifolia | CM028156.1 | 3 | CH_vpl_220 | 3 | 3 | 0.0000748434 |
| Vitis vinifera | chr10 | 3 | CH_vvi_407 | 3 | 5 | 0.000730618 |
| Zea mays | 4 | 3 | CH_zma_143 | 4 | 6 | 0.00000313199 |
| Capsicum annuum | PGAv.1.6.scaffold198 | 4 | CH_can_348 | 3 | 4 | 0.000166106 |
| Magnolia biondii | Chr13 | 4 | CH_mbi_382 | 3 | 3 | 0.0000323345 |
| Medicago truncatula | chr8 | 4 | CH_mtr_508 | 3 | 3 | 0.0000527327 |
| Populus trichocarpa | Chr16 | 4 | CH_ptr_197 | 4 | 4 | 0.00000016965 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_249 | 6 | 39 | 0.0000000379764 |
| Salix brachista | GWHAAZH00000016 | 4 | CH_sbr_252 | 3 | 3 | 0.0000788856 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_903 | 3 | 3 | 0.0000276599 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_904 | 3 | 3 | 0.0000276599 |
| Solanum lycopersicum | SL4.0ch07 | 4 | CH_sly_77 | 7 | 14 | 0.00000000000761484 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_106 | 5 | 8 | 0.00000000570317 |
| Solanum pennellii | Spenn-ch07 | 4 | CH_spe_127 | 6 | 28 | 0.0000000418985 |
| Solanum tuberosum | ST4.03ch07 | 4 | CH_stu_57 | 7 | 10 | 0.00000000000000114903 |
| Vanilla planifolia | CM028156.1 | 4 | CH_vpl_220 | 3 | 3 | 0.0000748434 |
| Vitis vinifera | chr10 | 4 | CH_vvi_407 | 3 | 5 | 0.000730618 |
| Zea mays | 4 | 4 | CH_zma_143 | 4 | 6 | 0.00000313199 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |