Functional clusters

Information

  • Type Gene Ontology
  • Description hydroquinone:oxygen oxidoreductase activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 3 CH_acertr_214 5 47 0.00000431918
Acer truncatum chr8 3 CH_acertr_232 3 3 0.0000084987
Actinidia chinensis Lachesis_group17 3 CH_ach_71 3 3 0.00000161118
Aquilegia oxysepala CHR02 3 CH_aox_151 3 5 0.000027575
Camellia sinensis var. sinensis Chr7 3 CH_camsi_650 3 5 0.000224934
Capsicum annuum PGAv.1.6.scaffold1010 3 CH_can_211 3 3 0.00000372633
Coffea canephora chr6 3 CH_ccan_256 3 28 0.000125182
Citrus clementina scaffold_6 3 CH_ccl_336 3 6 0.000229755
Carya illinoinensis Chr15 3 CH_cil_3 18 23 9.77927e-46
Corchorus olitorius AWUE01015448.1 3 CH_col_56 3 3 0.0000582405
Chenopodium quinoa C_Quinoa_Scaffold_1995 3 CH_cqu_279 3 3 0.0000136728
Davidia involucrata GWHABJS00000015 3 CH_din_255 3 4 0.0000818349
Erigeron canadensis Conyza_canadensis_scaffold:7 3 CH_eca_237 3 4 0.0000353229
Eucalyptus grandis Chr06 3 CH_egr_137 8 10 5.4991e-17
Eucalyptus grandis Chr05 3 CH_egr_220 6 6 0.000000000000560885
Erythranthe guttata scaffold_3 3 CH_egut_346 3 7 0.00022674
Eutrema salsugineum scaffold_2 3 CH_esa_106 4 14 0.0000031427
Fragaria x ananassa Fvb2-1 3 CH_fan_255 4 8 0.00000541637
Fragaria x ananassa Fvb2-2 3 CH_fan_304 5 35 0.000022106
Fragaria vesca Fvb2 3 CH_fve_72 7 36 0.000000000338651
Gossypium hirsutum A04 3 CH_ghi_231 4 4 0.000000152649
Gossypium hirsutum D04 3 CH_ghi_329 4 7 0.00000532762
Gossypium hirsutum A03 3 CH_ghi_610 3 4 0.000519235
Glycine max Gm07 3 CH_gma_274 3 3 0.0000373766
Glycine max Gm18 3 CH_gma_347 3 4 0.000149408
Gossypium raimondii Chr12 3 CH_gra_148 4 6 0.000000939671
Gossypium raimondii Chr03 3 CH_gra_281 3 4 0.0002282
Helianthus annuus HanXRQChr08 3 CH_han_248 4 5 0.000000106759
Helianthus annuus HanXRQChr14 3 CH_han_604 3 5 0.000276101
Lonicera japonica GWHAAZE00000008 3 CH_lonja_142 5 5 0.0000000000420596
Lactuca sativa Lsat_1_v8_lg_9 3 CH_lsa_469 3 7 0.000561934
Magnolia biondii Chr14 3 CH_mbi_59 7 22 0.000000000000060665
Malus domestica Chr01 3 CH_mdo_509 3 4 0.000139817
Nelumbo nucifera chr5 3 CH_nnu_156 3 4 0.0000113566
Olea europaea chr1 3 CH_oeu_134 3 4 0.0000263176
Olea europaea chr12 3 CH_oeu_186 3 5 0.0000657671
Oryza sativa ssp. japonica chr01 3 CH_osa_157 6 66 0.000000306694
Oryza sativa ssp. japonica chr05 3 CH_osa_300 3 4 0.0000547961
Oryza sativa ssp. japonica chr12 3 CH_osa_326 3 5 0.000136919
Punica granatum NC_045129.1 3 CH_pgr_209 4 8 0.0000089445
Punica granatum NC_045130.1 3 CH_pgr_53 6 7 0.00000000000168322
Prunus persica Pp08 3 CH_ppe_42 8 14 2.69062e-17
Populus trichocarpa Chr19 3 CH_ptr_132 5 6 0.000000000956873
Populus trichocarpa Chr16 3 CH_ptr_302 5 35 0.0000501622
Quercus lobata CM012294 3 CH_qlo_4 21 75 4.00895e-41
Quercus lobata 7 3 CH_qlo_753 3 3 0.0000691566
Rosa chinensis RcHm_v2.0_Chr5 3 CH_rch_396 4 8 0.00000452278
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_68 11 67 5.80744e-17
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_764 4 25 0.000805832
Rhododendron simsii chr11 3 CH_rsi_54 8 14 2.57139e-17
Salvia bowleyana GWHASIU00000007 3 CH_sbo_383 3 4 0.000153175
Salvia bowleyana GWHASIU00000005 3 CH_sbo_440 3 5 0.000382669
Sequoiadendron giganteum chr6 3 CH_sgi_1243 3 3 0.000303725
Solanum lycopersicum SL4.0ch05 3 CH_sly_163 4 6 0.000000135894
Solanum lycopersicum SL4.0ch09 3 CH_sly_559 3 8 0.000750396
Selaginella moellendorffii scaffold_2 3 CH_smo_54 3 3 0.00000215783
Selaginella moellendorffii scaffold_2 3 CH_smo_55 3 3 0.00000215783
Solanum pennellii Spenn-ch05 3 CH_spe_115 4 5 0.0000000166919
Solanum tuberosum ST4.03ch05 3 CH_stu_346 3 4 0.000027894
Trochodendron aralioides group4 3 CH_tar_104 4 4 0.0000000233469
Theobroma cacao Chromosome_5 3 CH_tca_146 4 6 0.00000015637
Theobroma cacao Chromosome_8 3 CH_tca_257 3 4 0.0000569654
Tripterygium wilfordii NC_052246.1 3 CH_twi_142 4 9 0.00000342442
Tripterygium wilfordii NC_052236.1 3 CH_twi_289 5 73 0.000337238
Tripterygium wilfordii NC_052234.1 3 CH_twi_50 5 6 0.000000000141425
Vigna mungo CM024070.1 3 CH_vmu_318 4 39 0.000825337
Vitis vinifera chr18 3 CH_vvi_306 3 4 0.000207542
Zea mays 3 3 CH_zma_121 5 41 0.00000077161
Acer truncatum chr13 4 CH_acertr_214 5 47 0.00000431918
Acer truncatum chr8 4 CH_acertr_232 3 3 0.0000084987
Actinidia chinensis Lachesis_group17 4 CH_ach_71 3 3 0.00000161118
Aquilegia oxysepala CHR02 4 CH_aox_151 3 5 0.000027575
Camellia sinensis var. sinensis Chr7 4 CH_camsi_650 3 5 0.000224934
Capsicum annuum PGAv.1.6.scaffold1010 4 CH_can_211 3 3 0.00000372633
Coffea canephora chr6 4 CH_ccan_256 3 28 0.000125182
Citrus clementina scaffold_6 4 CH_ccl_336 3 6 0.000229755
Carya illinoinensis Chr15 4 CH_cil_3 18 23 9.77927e-46
Corchorus olitorius AWUE01015448.1 4 CH_col_56 3 3 0.0000582405
Chenopodium quinoa C_Quinoa_Scaffold_1995 4 CH_cqu_279 3 3 0.0000136728
Davidia involucrata GWHABJS00000015 4 CH_din_255 3 4 0.0000818349
Erigeron canadensis Conyza_canadensis_scaffold:7 4 CH_eca_237 3 4 0.0000353229
Eucalyptus grandis Chr06 4 CH_egr_137 8 10 5.4991e-17
Eucalyptus grandis Chr05 4 CH_egr_220 6 6 0.000000000000560885
Erythranthe guttata scaffold_3 4 CH_egut_346 3 7 0.00022674
Eutrema salsugineum scaffold_2 4 CH_esa_106 4 14 0.0000031427
Fragaria x ananassa Fvb2-1 4 CH_fan_255 4 8 0.00000541637
Fragaria x ananassa Fvb2-2 4 CH_fan_304 5 35 0.000022106
Fragaria vesca Fvb2 4 CH_fve_72 7 36 0.000000000338651
Gossypium hirsutum A04 4 CH_ghi_231 4 4 0.000000152649
Gossypium hirsutum D04 4 CH_ghi_329 4 7 0.00000532762
Gossypium hirsutum A03 4 CH_ghi_610 3 4 0.000519235
Glycine max Gm07 4 CH_gma_274 3 3 0.0000373766
Glycine max Gm18 4 CH_gma_347 3 4 0.000149408
Gossypium raimondii Chr12 4 CH_gra_148 4 6 0.000000939671
Gossypium raimondii Chr03 4 CH_gra_281 3 4 0.0002282
Helianthus annuus HanXRQChr08 4 CH_han_248 4 5 0.000000106759
Helianthus annuus HanXRQChr14 4 CH_han_604 3 5 0.000276101
Lonicera japonica GWHAAZE00000008 4 CH_lonja_142 5 5 0.0000000000420596
Lactuca sativa Lsat_1_v8_lg_9 4 CH_lsa_469 3 7 0.000561934
Magnolia biondii Chr14 4 CH_mbi_59 7 22 0.000000000000060665
Malus domestica Chr01 4 CH_mdo_509 3 4 0.000139817
Nelumbo nucifera chr5 4 CH_nnu_156 3 4 0.0000113566
Olea europaea chr1 4 CH_oeu_134 3 4 0.0000263176
Olea europaea chr12 4 CH_oeu_186 3 5 0.0000657671
Oryza sativa ssp. japonica chr01 4 CH_osa_157 6 66 0.000000306694
Oryza sativa ssp. japonica chr05 4 CH_osa_300 3 4 0.0000547961
Oryza sativa ssp. japonica chr12 4 CH_osa_326 3 5 0.000136919
Punica granatum NC_045129.1 4 CH_pgr_209 4 8 0.0000089445
Punica granatum NC_045130.1 4 CH_pgr_53 6 7 0.00000000000168322
Prunus persica Pp08 4 CH_ppe_42 8 14 2.69062e-17
Populus trichocarpa Chr19 4 CH_ptr_132 5 6 0.000000000956873
Populus trichocarpa Chr16 4 CH_ptr_302 5 35 0.0000501622
Quercus lobata CM012294 4 CH_qlo_4 21 75 4.00895e-41
Quercus lobata 7 4 CH_qlo_753 3 3 0.0000691566
Rosa chinensis RcHm_v2.0_Chr5 4 CH_rch_396 4 8 0.00000452278
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_68 11 67 5.80744e-17
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_764 4 25 0.000805832
Rhododendron simsii chr11 4 CH_rsi_54 8 14 2.57139e-17
Salvia bowleyana GWHASIU00000007 4 CH_sbo_383 3 4 0.000153175
Salvia bowleyana GWHASIU00000005 4 CH_sbo_440 3 5 0.000382669
Sequoiadendron giganteum chr6 4 CH_sgi_1243 3 3 0.000303725
Solanum lycopersicum SL4.0ch05 4 CH_sly_163 4 6 0.000000135894
Solanum lycopersicum SL4.0ch09 4 CH_sly_559 3 8 0.000750396
Selaginella moellendorffii scaffold_2 4 CH_smo_54 3 3 0.00000215783
Selaginella moellendorffii scaffold_2 4 CH_smo_55 3 3 0.00000215783
Solanum pennellii Spenn-ch05 4 CH_spe_115 4 5 0.0000000166919
Solanum tuberosum ST4.03ch05 4 CH_stu_346 3 4 0.000027894
Trochodendron aralioides group4 4 CH_tar_104 4 4 0.0000000233469
Theobroma cacao Chromosome_5 4 CH_tca_146 4 6 0.00000015637
Theobroma cacao Chromosome_8 4 CH_tca_257 3 4 0.0000569654
Tripterygium wilfordii NC_052246.1 4 CH_twi_142 4 9 0.00000342442
Tripterygium wilfordii NC_052236.1 4 CH_twi_289 5 73 0.000337238
Tripterygium wilfordii NC_052234.1 4 CH_twi_50 5 6 0.000000000141425
Vigna mungo CM024070.1 4 CH_vmu_318 4 39 0.000825337
Vitis vinifera chr18 4 CH_vvi_306 3 4 0.000207542
Zea mays 3 4 CH_zma_121 5 41 0.00000077161

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001