Functional clusters
Information
- Type Gene Ontology
- Description meristem development
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_317 | 3 | 3 | 0.000645471 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_98 | 6 | 16 | 0.00000000245364 |
| Brassica carinata | ChrB07 | 3 | CH_bca_27 | 8 | 11 | 0.00000000000000281817 |
| Brassica napus | A06 | 3 | CH_bna_313 | 4 | 5 | 0.00000671068 |
| Brassica napus | C06 | 3 | CH_bna_324 | 7 | 69 | 0.0000082688 |
| Brassica rapa | A06 | 3 | CH_bra_272 | 3 | 3 | 0.000518273 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 3 | CH_bvu_50 | 8 | 16 | 0.000000000750414 |
| Cardamine hirsuta | Chr1 | 3 | CH_chi_72 | 10 | 76 | 0.00000000105027 |
| Corchorus olitorius | AWUE01014255.1 | 3 | CH_col_37 | 4 | 4 | 0.00000111826 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 3 | CH_cqu_36 | 9 | 12 | 0.00000000000000132584 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1373 | 3 | CH_cqu_65 | 8 | 15 | 0.0000000000104901 |
| Fragaria vesca | Fvb3 | 3 | CH_fve_40 | 8 | 13 | 0.000000000000120014 |
| Lotus japonicus | chr6 | 3 | CH_lja_80 | 5 | 5 | 0.0000000126405 |
| Lonicera japonica | GWHAAZE00000008 | 3 | CH_lonja_362 | 4 | 4 | 0.0000324818 |
| Olea europaea | chr6 | 3 | CH_oeu_128 | 4 | 5 | 0.000019334 |
| Pisum sativum | chr5LG3 | 3 | CH_psa_24 | 8 | 10 | 0.00000000000000214505 |
| Quercus lobata | 8 | 3 | CH_qlo_176 | 10 | 22 | 0.000000000000121436 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_14 | 18 | 53 | 7.17244e-30 |
| Rhododendron simsii | chr06 | 3 | CH_rsi_125 | 6 | 6 | 0.000000000150193 |
| Rhododendron simsii | chr09 | 3 | CH_rsi_302 | 6 | 22 | 0.0000106016 |
| Solanum lycopersicum | SL4.0ch04 | 3 | CH_sly_17 | 15 | 27 | 3.88623e-23 |
| Solanum lycopersicum | SL4.0ch07 | 3 | CH_sly_392 | 4 | 5 | 0.000148992 |
| Solanum pennellii | Spenn-ch07 | 3 | CH_spe_120 | 6 | 9 | 0.0000000222949 |
| Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_317 | 3 | 3 | 0.000645471 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_98 | 6 | 16 | 0.00000000245364 |
| Brassica carinata | ChrB07 | 4 | CH_bca_27 | 8 | 11 | 0.00000000000000281817 |
| Brassica napus | A06 | 4 | CH_bna_313 | 4 | 5 | 0.00000671068 |
| Brassica napus | C06 | 4 | CH_bna_324 | 7 | 69 | 0.0000082688 |
| Brassica rapa | A06 | 4 | CH_bra_272 | 3 | 3 | 0.000518273 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 4 | CH_bvu_50 | 8 | 16 | 0.000000000750414 |
| Cardamine hirsuta | Chr1 | 4 | CH_chi_72 | 10 | 76 | 0.00000000105027 |
| Corchorus olitorius | AWUE01014255.1 | 4 | CH_col_37 | 4 | 4 | 0.00000111826 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 4 | CH_cqu_36 | 9 | 12 | 0.00000000000000132584 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1373 | 4 | CH_cqu_65 | 8 | 15 | 0.0000000000104901 |
| Fragaria vesca | Fvb3 | 4 | CH_fve_40 | 8 | 13 | 0.000000000000120014 |
| Lotus japonicus | chr6 | 4 | CH_lja_80 | 5 | 5 | 0.0000000126405 |
| Lonicera japonica | GWHAAZE00000008 | 4 | CH_lonja_362 | 4 | 4 | 0.0000324818 |
| Olea europaea | chr6 | 4 | CH_oeu_128 | 4 | 5 | 0.000019334 |
| Pisum sativum | chr5LG3 | 4 | CH_psa_24 | 8 | 10 | 0.00000000000000214505 |
| Quercus lobata | 8 | 4 | CH_qlo_176 | 10 | 22 | 0.000000000000121436 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_14 | 18 | 53 | 7.17244e-30 |
| Rhododendron simsii | chr06 | 4 | CH_rsi_125 | 6 | 6 | 0.000000000150193 |
| Rhododendron simsii | chr09 | 4 | CH_rsi_302 | 6 | 22 | 0.0000106016 |
| Solanum lycopersicum | SL4.0ch04 | 4 | CH_sly_17 | 15 | 27 | 3.88623e-23 |
| Solanum lycopersicum | SL4.0ch07 | 4 | CH_sly_392 | 4 | 5 | 0.000148992 |
| Solanum pennellii | Spenn-ch07 | 4 | CH_spe_120 | 6 | 9 | 0.0000000222949 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009933 | meristem structural organization | 2 |
| GO:0010071 | root meristem specification | 6 |
| GO:0010073 | meristem maintenance | 8 |
| GO:0010074 | maintenance of meristem identity | 2 |
| GO:0010077 | maintenance of inflorescence meristem identity | 2 |
| GO:0010082 | regulation of root meristem growth | 2 |
| GO:0010448 | vegetative meristem growth | 2 |
| GO:0010492 | maintenance of shoot apical meristem identity | 2 |
| GO:0010582 | floral meristem determinacy | 2 |
| GO:0035266 | meristem growth | 2 |
| GO:0048509 | regulation of meristem development | 2 |
| GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | 2 |
| GO:0090421 | embryonic meristem initiation | 8 |
| GO:0090506 | axillary shoot meristem initiation | 6 |
| GO:1902182 | shoot apical meristem development | 10 |
| GO:1902183 | regulation of shoot apical meristem development | 2 |
| GO:1902184 | negative regulation of shoot apical meristem development | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |