Functional clusters
Information
- Type Gene Ontology
- Description amino-acid racemase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 3 | CH_acertr_106 | 4 | 13 | 0.0000000262775 |
| Camellia sinensis var. sinensis | Chr11 | 3 | CH_camsi_70 | 5 | 7 | 0.000000000000175459 |
| Carpinus fangiana | Cfa02 | 3 | CH_cfa_330 | 2 | 2 | 0.000757346 |
| Cucumis melo | chr01 | 3 | CH_cme_118 | 3 | 5 | 0.00000133487 |
| Cucumis sativus L. | chr7 | 3 | CH_csa_148 | 4 | 47 | 0.0000108289 |
| Durio zibethinus | NW_019167938.1 | 3 | CH_dzi_322 | 2 | 2 | 0.000695233 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 3 | CH_eca_410 | 2 | 2 | 0.000448722 |
| Eucalyptus grandis | Chr03 | 3 | CH_egr_7 | 15 | 16 | 5.78139e-48 |
| Fragaria vesca | Fvb2 | 3 | CH_fve_139 | 3 | 3 | 0.000000182202 |
| Gossypium hirsutum | D08 | 3 | CH_ghi_278 | 3 | 4 | 0.00000122334 |
| Gossypium raimondii | Chr04 | 3 | CH_gra_139 | 3 | 4 | 0.000000603513 |
| Helianthus annuus | HanXRQChr01 | 3 | CH_han_316 | 3 | 3 | 0.00000101918 |
| Hydrangea macrophylla | Hma1.2p1_0628F.1 | 3 | CH_hma_247 | 2 | 2 | 0.000333259 |
| Lupinus albus | Lalb_Chr06 | 3 | CH_lal_402 | 2 | 2 | 0.000787236 |
| Lotus japonicus | chr5 | 3 | CH_lja_158 | 3 | 4 | 0.00000368093 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 3 | CH_lsa_219 | 3 | 5 | 0.000000792497 |
| Malus domestica | Chr11 | 3 | CH_mdo_318 | 3 | 5 | 0.00000474414 |
| Medicago truncatula | chr1 | 3 | CH_mtr_219 | 4 | 7 | 0.00000000520468 |
| Medicago truncatula | chr1 | 3 | CH_mtr_384 | 3 | 4 | 0.00000289631 |
| Nicotiana tabacum | Nitab4.5_0001028 | 3 | CH_nta_18 | 3 | 3 | 0.0000000180611 |
| Petunia axillaris | Peaxi162Scf00570 | 3 | CH_pax_334 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045132.1 | 3 | CH_pgr_377 | 2 | 2 | 0.000750356 |
| Phaseolus vulgaris | Chr07 | 3 | CH_pvu_133 | 3 | 3 | 0.000000283418 |
| Quercus lobata | 12 | 3 | CH_qlo_445 | 3 | 4 | 0.000000159926 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 3 | CH_rch_257 | 3 | 3 | 0.0000000476781 |
| Trochodendron aralioides | group2 | 3 | CH_tar_393 | 2 | 2 | 0.00036022 |
| Theobroma cacao | Chromosome_1 | 3 | CH_tca_387 | 2 | 2 | 0.000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_74 | 3 | CH_tpr_92 | 3 | 3 | 0.000000171909 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_386 | 2 | 2 | 0.000929238 |
| Vigna mungo | CM024071.1 | 3 | CH_vmu_40 | 4 | 6 | 0.000000000424824 |
| Vitis vinifera | chr7 | 3 | CH_vvi_155 | 3 | 3 | 0.000000173574 |
| Acer truncatum | chr5 | 4 | CH_acertr_106 | 4 | 13 | 0.0000000262775 |
| Camellia sinensis var. sinensis | Chr11 | 4 | CH_camsi_70 | 5 | 7 | 0.000000000000175459 |
| Carpinus fangiana | Cfa02 | 4 | CH_cfa_330 | 2 | 2 | 0.000757346 |
| Cucumis melo | chr01 | 4 | CH_cme_118 | 3 | 5 | 0.00000133487 |
| Cucumis sativus L. | chr7 | 4 | CH_csa_148 | 4 | 47 | 0.0000108289 |
| Durio zibethinus | NW_019167938.1 | 4 | CH_dzi_322 | 2 | 2 | 0.000695233 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 4 | CH_eca_410 | 2 | 2 | 0.000448722 |
| Eucalyptus grandis | Chr03 | 4 | CH_egr_7 | 15 | 16 | 5.78139e-48 |
| Fragaria vesca | Fvb2 | 4 | CH_fve_139 | 3 | 3 | 0.000000182202 |
| Gossypium hirsutum | D08 | 4 | CH_ghi_278 | 3 | 4 | 0.00000122334 |
| Gossypium raimondii | Chr04 | 4 | CH_gra_139 | 3 | 4 | 0.000000603513 |
| Helianthus annuus | HanXRQChr01 | 4 | CH_han_316 | 3 | 3 | 0.00000101918 |
| Hydrangea macrophylla | Hma1.2p1_0628F.1 | 4 | CH_hma_247 | 2 | 2 | 0.000333259 |
| Lupinus albus | Lalb_Chr06 | 4 | CH_lal_402 | 2 | 2 | 0.000787236 |
| Lotus japonicus | chr5 | 4 | CH_lja_158 | 3 | 4 | 0.00000368093 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 4 | CH_lsa_219 | 3 | 5 | 0.000000792497 |
| Malus domestica | Chr11 | 4 | CH_mdo_318 | 3 | 5 | 0.00000474414 |
| Medicago truncatula | chr1 | 4 | CH_mtr_219 | 4 | 7 | 0.00000000520468 |
| Medicago truncatula | chr1 | 4 | CH_mtr_384 | 3 | 4 | 0.00000289631 |
| Nicotiana tabacum | Nitab4.5_0001028 | 4 | CH_nta_18 | 3 | 3 | 0.0000000180611 |
| Petunia axillaris | Peaxi162Scf00570 | 4 | CH_pax_334 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045132.1 | 4 | CH_pgr_377 | 2 | 2 | 0.000750356 |
| Phaseolus vulgaris | Chr07 | 4 | CH_pvu_133 | 3 | 3 | 0.000000283418 |
| Quercus lobata | 12 | 4 | CH_qlo_445 | 3 | 4 | 0.000000159926 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 4 | CH_rch_257 | 3 | 3 | 0.0000000476781 |
| Trochodendron aralioides | group2 | 4 | CH_tar_393 | 2 | 2 | 0.00036022 |
| Theobroma cacao | Chromosome_1 | 4 | CH_tca_387 | 2 | 2 | 0.000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_74 | 4 | CH_tpr_92 | 3 | 3 | 0.000000171909 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_386 | 2 | 2 | 0.000929238 |
| Vigna mungo | CM024071.1 | 4 | CH_vmu_40 | 4 | 6 | 0.000000000424824 |
| Vitis vinifera | chr7 | 4 | CH_vvi_155 | 3 | 3 | 0.000000173574 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0008837 | diaminopimelate epimerase activity | 4 |
| GO:0018114 | threonine racemase activity | 4 |
| GO:0030378 | serine racemase activity | 10 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |