Functional clusters
Information
- Type Gene Ontology
- Description acyl-CoA hydrolase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_362 | 3 | CH_aag_180 | 2 | 2 | 0.000802568 |
| Acer truncatum | chr5 | 3 | CH_acertr_33 | 5 | 5 | 0.000000000000238459 |
| Acer truncatum | chr5 | 3 | CH_acertr_78 | 4 | 5 | 0.0000000037569 |
| Camellia sinensis var. sinensis | Chr11 | 3 | CH_camsi_379 | 3 | 6 | 0.00000353139 |
| Capsicum annuum | PGAv.1.6.scaffold78 | 3 | CH_can_175 | 3 | 3 | 0.000000358301 |
| Carpinus fangiana | Cfa01 | 3 | CH_cfa_127 | 3 | 3 | 0.00000048182 |
| Corchorus olitorius | AWUE01020729.1 | 3 | CH_col_11 | 5 | 6 | 0.00000000000688275 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 3 | CH_eca_450 | 3 | 24 | 0.000731423 |
| Fragaria vesca | Fvb3 | 3 | CH_fve_12 | 8 | 15 | 1.49778e-20 |
| Gossypium hirsutum | A09 | 3 | CH_ghi_120 | 5 | 7 | 0.0000000000348758 |
| Gossypium hirsutum | D09 | 3 | CH_ghi_348 | 3 | 3 | 0.00000830981 |
| Glycine max | Gm18 | 3 | CH_gma_211 | 3 | 3 | 0.00000146948 |
| Gossypium raimondii | Chr06 | 3 | CH_gra_161 | 3 | 3 | 0.000003518 |
| Helianthus annuus | HanXRQChr14 | 3 | CH_han_340 | 3 | 3 | 0.0000018278 |
| Helianthus annuus | HanXRQChr04 | 3 | CH_han_614 | 3 | 11 | 0.000301016 |
| Hydrangea macrophylla | Hma1.2p1_0227F.1 | 3 | CH_hma_76 | 3 | 3 | 0.000000647896 |
| Lotus japonicus | chr3 | 3 | CH_lja_130 | 3 | 3 | 0.000000920437 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_242 | 4 | 27 | 0.00000235048 |
| Malus domestica | Chr03 | 3 | CH_mdo_306 | 3 | 3 | 0.00000286889 |
| Malus domestica | Chr01 | 3 | CH_mdo_45 | 6 | 9 | 0.00000000000000803751 |
| Malus domestica | Chr11 | 3 | CH_mdo_60 | 5 | 5 | 0.000000000000315631 |
| Manihot esculenta | Chromosome05 | 3 | CH_mes_121 | 4 | 4 | 0.000000000338145 |
| Medicago truncatula | chr3 | 3 | CH_mtr_31 | 7 | 7 | 6.50257e-22 |
| Nicotiana tabacum | Nitab4.5_0000744 | 3 | CH_nta_111 | 2 | 2 | 0.000329182 |
| Petunia axillaris | Peaxi162Scf00021 | 3 | CH_pax_108 | 3 | 3 | 0.000000891016 |
| Petunia axillaris | Peaxi162Scf01058 | 3 | CH_pax_109 | 3 | 3 | 0.000000891016 |
| Prunus persica | Pp06 | 3 | CH_ppe_47 | 6 | 6 | 1.56129e-16 |
| Pisum sativum | chr4LG4 | 3 | CH_psa_119 | 4 | 27 | 0.000000521838 |
| Papaver somniferum | NW_020627707.1 | 3 | CH_pso_372 | 4 | 28 | 0.0000104487 |
| Papaver somniferum | NC_039365.1 | 3 | CH_pso_618 | 3 | 12 | 0.000434697 |
| Quercus lobata | 8 | 3 | CH_qlo_182 | 8 | 71 | 0.000000000000155119 |
| Quercus lobata | 1 | 3 | CH_qlo_297 | 4 | 4 | 0.00000000126344 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 3 | CH_rch_34 | 7 | 9 | 1.95281e-20 |
| Rhododendron simsii | chr13 | 3 | CH_rsi_231 | 3 | 3 | 0.000000524708 |
| Salvia bowleyana | GWHASIU00000003 | 3 | CH_sbo_222 | 5 | 79 | 0.000000920373 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_701 | 3 | 3 | 0.000000783163 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_210 | 3 | 3 | 0.000000852661 |
| Selaginella moellendorffii | scaffold_20 | 3 | CH_smo_63 | 3 | 5 | 0.0000045755 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_152 | 3 | 3 | 0.000000249282 |
| Solanum tuberosum | ST4.03ch01 | 3 | CH_stu_248 | 3 | 3 | 0.000000866628 |
| Theobroma cacao | Chromosome_6 | 3 | CH_tca_178 | 3 | 3 | 0.000000675875 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_291 | 3 | CH_tpr_42 | 4 | 5 | 0.00000000045542 |
| Tripterygium wilfordii | NC_052233.1 | 3 | CH_twi_215 | 3 | 8 | 0.0000574548 |
| Vitis vinifera | chr15 | 3 | CH_vvi_175 | 3 | 3 | 0.00000072901 |
| Anthoceros agrestis | Sc2ySwM_362 | 4 | CH_aag_180 | 2 | 2 | 0.000802568 |
| Acer truncatum | chr5 | 4 | CH_acertr_33 | 5 | 5 | 0.000000000000238459 |
| Acer truncatum | chr5 | 4 | CH_acertr_78 | 4 | 5 | 0.0000000037569 |
| Camellia sinensis var. sinensis | Chr11 | 4 | CH_camsi_379 | 3 | 6 | 0.00000353139 |
| Capsicum annuum | PGAv.1.6.scaffold78 | 4 | CH_can_175 | 3 | 3 | 0.000000358301 |
| Carpinus fangiana | Cfa01 | 4 | CH_cfa_127 | 3 | 3 | 0.00000048182 |
| Corchorus olitorius | AWUE01020729.1 | 4 | CH_col_11 | 5 | 6 | 0.00000000000688275 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 4 | CH_eca_450 | 3 | 24 | 0.000731423 |
| Fragaria vesca | Fvb3 | 4 | CH_fve_12 | 8 | 15 | 1.49778e-20 |
| Gossypium hirsutum | A09 | 4 | CH_ghi_120 | 5 | 7 | 0.0000000000348758 |
| Gossypium hirsutum | D09 | 4 | CH_ghi_348 | 3 | 3 | 0.00000830981 |
| Glycine max | Gm18 | 4 | CH_gma_211 | 3 | 3 | 0.00000146948 |
| Gossypium raimondii | Chr06 | 4 | CH_gra_161 | 3 | 3 | 0.000003518 |
| Helianthus annuus | HanXRQChr14 | 4 | CH_han_340 | 3 | 3 | 0.0000018278 |
| Helianthus annuus | HanXRQChr04 | 4 | CH_han_614 | 3 | 11 | 0.000301016 |
| Hydrangea macrophylla | Hma1.2p1_0227F.1 | 4 | CH_hma_76 | 3 | 3 | 0.000000647896 |
| Lotus japonicus | chr3 | 4 | CH_lja_130 | 3 | 3 | 0.000000920437 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_242 | 4 | 27 | 0.00000235048 |
| Malus domestica | Chr03 | 4 | CH_mdo_306 | 3 | 3 | 0.00000286889 |
| Malus domestica | Chr01 | 4 | CH_mdo_45 | 6 | 9 | 0.00000000000000803751 |
| Malus domestica | Chr11 | 4 | CH_mdo_60 | 5 | 5 | 0.000000000000315631 |
| Manihot esculenta | Chromosome05 | 4 | CH_mes_121 | 4 | 4 | 0.000000000338145 |
| Medicago truncatula | chr3 | 4 | CH_mtr_31 | 7 | 7 | 6.50257e-22 |
| Nicotiana tabacum | Nitab4.5_0000744 | 4 | CH_nta_111 | 2 | 2 | 0.000329182 |
| Petunia axillaris | Peaxi162Scf00021 | 4 | CH_pax_108 | 3 | 3 | 0.000000891016 |
| Petunia axillaris | Peaxi162Scf01058 | 4 | CH_pax_109 | 3 | 3 | 0.000000891016 |
| Prunus persica | Pp06 | 4 | CH_ppe_47 | 6 | 6 | 1.56129e-16 |
| Pisum sativum | chr4LG4 | 4 | CH_psa_119 | 4 | 27 | 0.000000521838 |
| Papaver somniferum | NW_020627707.1 | 4 | CH_pso_372 | 4 | 28 | 0.0000104487 |
| Papaver somniferum | NC_039365.1 | 4 | CH_pso_618 | 3 | 12 | 0.000434697 |
| Quercus lobata | 8 | 4 | CH_qlo_182 | 8 | 71 | 0.000000000000155119 |
| Quercus lobata | 1 | 4 | CH_qlo_297 | 4 | 4 | 0.00000000126344 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 4 | CH_rch_34 | 7 | 9 | 1.95281e-20 |
| Rhododendron simsii | chr13 | 4 | CH_rsi_231 | 3 | 3 | 0.000000524708 |
| Salvia bowleyana | GWHASIU00000003 | 4 | CH_sbo_222 | 5 | 79 | 0.000000920373 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_701 | 3 | 3 | 0.000000783163 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_210 | 3 | 3 | 0.000000852661 |
| Selaginella moellendorffii | scaffold_20 | 4 | CH_smo_63 | 3 | 5 | 0.0000045755 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_152 | 3 | 3 | 0.000000249282 |
| Solanum tuberosum | ST4.03ch01 | 4 | CH_stu_248 | 3 | 3 | 0.000000866628 |
| Theobroma cacao | Chromosome_6 | 4 | CH_tca_178 | 3 | 3 | 0.000000675875 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_291 | 4 | CH_tpr_42 | 4 | 5 | 0.00000000045542 |
| Tripterygium wilfordii | NC_052233.1 | 4 | CH_twi_215 | 3 | 8 | 0.0000574548 |
| Vitis vinifera | chr15 | 4 | CH_vvi_175 | 3 | 3 | 0.00000072901 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |