Functional clusters
Information
- Type Gene Ontology
- Description nutrient reservoir activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 3 | CH_aag_152 | 4 | 17 | 0.000367909 |
| Anthoceros agrestis | Sc2ySwM_344 | 3 | CH_aag_18 | 9 | 51 | 0.00000000000248609 |
| Acer truncatum | chr7 | 3 | CH_acertr_121 | 5 | 26 | 0.0000000363482 |
| Actinidia chinensis | Lachesis_group9 | 3 | CH_ach_109 | 3 | 5 | 0.0000360947 |
| Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_138 | 3 | 3 | 0.00000297347 |
| Arabidopsis thaliana | Chr4 | 3 | CH_ath_95 | 4 | 4 | 0.00000000193333 |
| Brassica carinata | ChrC09 | 3 | CH_bca_114 | 5 | 11 | 0.000000000695035 |
| Brassica carinata | Contig1030 | 3 | CH_bca_588 | 3 | 5 | 0.0000845335 |
| Brassica napus | C01 | 3 | CH_bna_350 | 3 | 3 | 0.0000135584 |
| Brassica napus | A01 | 3 | CH_bna_85 | 5 | 7 | 0.0000000000649909 |
| Brassica oleracea | C1 | 3 | CH_bol_93 | 4 | 6 | 0.000000027563 |
| Corylus avellana | 8 | 3 | CH_cav_208 | 3 | 5 | 0.000025202 |
| Chara braunii | BFEA01000546 | 3 | CH_cbr_5 | 8 | 22 | 4.3713e-17 |
| Chara braunii | BFEA01000591 | 3 | CH_cbr_69 | 3 | 3 | 0.00000633257 |
| Chara braunii | BFEA01000149 | 3 | CH_cbr_84 | 3 | 4 | 0.0000253191 |
| Ceratophyllum demersum | 1 | 3 | CH_cde_38 | 5 | 19 | 0.0000000522311 |
| Carpinus fangiana | Cfa01 | 3 | CH_cfa_40 | 5 | 6 | 0.0000000000019052 |
| Carya illinoinensis | Chr03 | 3 | CH_cil_164 | 4 | 5 | 0.0000000138406 |
| Carya illinoinensis | Chr01 | 3 | CH_cil_304 | 3 | 4 | 0.0000223283 |
| Cucumis melo | chr04 | 3 | CH_cme_55 | 4 | 4 | 0.00000000162118 |
| Carica papaya | supercontig_10 | 3 | CH_cpa_30 | 5 | 13 | 0.00000000157371 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_79 | 4 | 4 | 0.00000000358854 |
| Cucumis sativus L. | chr3 | 3 | CH_csa_71 | 4 | 5 | 0.00000000431818 |
| Daucus carota | DCARv2_Chr3 | 3 | CH_dca_62 | 6 | 15 | 0.000000000529738 |
| Davidia involucrata | GWHABJS00000010 | 3 | CH_din_199 | 3 | 4 | 0.0000122427 |
| Erythranthe guttata | scaffold_10 | 3 | CH_egut_183 | 4 | 7 | 0.000000709986 |
| Erythranthe guttata | scaffold_7 | 3 | CH_egut_303 | 3 | 4 | 0.0000929886 |
| Erythranthe guttata | scaffold_12 | 3 | CH_egut_79 | 5 | 5 | 0.0000000000170242 |
| Fragaria x ananassa | Fvb2-1 | 3 | CH_fan_268 | 3 | 3 | 0.0000083277 |
| Fragaria x ananassa | Fvb2-2 | 3 | CH_fan_52 | 5 | 7 | 0.0000000000283041 |
| Glycine max | Gm03 | 3 | CH_gma_242 | 3 | 3 | 0.00000789627 |
| Lotus japonicus | chr4 | 3 | CH_lja_167 | 3 | 3 | 0.00000625897 |
| Lonicera japonica | GWHAAZE00000009 | 3 | CH_lonja_350 | 3 | 4 | 0.0000208444 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 3 | CH_lsa_135 | 4 | 5 | 0.0000000078935 |
| Magnolia biondii | Chr07 | 3 | CH_mbi_2 | 13 | 19 | 8.12635e-36 |
| Medicago truncatula | chr8 | 3 | CH_mtr_412 | 3 | 3 | 0.00000740663 |
| Medicago truncatula | chr8 | 3 | CH_mtr_461 | 3 | 4 | 0.000029615 |
| Nelumbo nucifera | chr1 | 3 | CH_nnu_16 | 7 | 10 | 4.19029e-17 |
| Nicotiana tabacum | Nitab4.5_0000470 | 3 | CH_nta_22 | 4 | 6 | 0.000000042476 |
| Oryza sativa ssp. japonica | chr05 | 3 | CH_osa_3 | 17 | 21 | 2.34766e-41 |
| Punica granatum | NC_045133.1 | 3 | CH_pgr_225 | 3 | 4 | 0.000018911 |
| Pisum sativum | chr1LG6 | 3 | CH_psa_23 | 6 | 6 | 0.00000000000000116993 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_287 | 3 | 6 | 0.000165009 |
| Papaver somniferum | NC_039363.1 | 3 | CH_pso_547 | 3 | 7 | 0.000224525 |
| Populus trichocarpa | Chr19 | 3 | CH_ptr_139 | 4 | 4 | 0.00000000224558 |
| Phaseolus vulgaris | Chr11 | 3 | CH_pvu_2 | 17 | 21 | 1.98183e-46 |
| Quercus lobata | CM012294 | 3 | CH_qlo_392 | 4 | 5 | 0.0000000261032 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 3 | CH_rch_44 | 7 | 9 | 2.21287e-19 |
| Rhododendron simsii | chr01 | 3 | CH_rsi_194 | 4 | 8 | 0.0000000769385 |
| Salvia bowleyana | GWHASIU00000006 | 3 | CH_sbo_359 | 4 | 48 | 0.000129373 |
| Sechium edule | LG01 | 3 | CH_sed_134 | 3 | 3 | 0.00000870365 |
| Sechium edule | LG05 | 3 | CH_sed_154 | 3 | 4 | 0.0000347975 |
| Sapria himalayana | scaffold60_3140063 | 3 | CH_shi_55 | 4 | 12 | 0.0000000582303 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_250 | 3 | 5 | 0.0000201697 |
| Solanum pennellii | Spenn-ch09 | 3 | CH_spe_301 | 3 | 7 | 0.0000705577 |
| Solanum tuberosum | ST4.03ch09 | 3 | CH_stu_512 | 3 | 5 | 0.000280889 |
| Tarenaya hassleriana | NW_010966021.1 | 3 | CH_tha_110 | 3 | 5 | 0.0000708487 |
| Vitis vinifera | chr12 | 3 | CH_vvi_179 | 4 | 14 | 0.000000942055 |
| Zea mays | 1 | 3 | CH_zma_214 | 3 | 4 | 0.00011193 |
| Zea mays | 4 | 3 | CH_zma_256 | 3 | 5 | 0.000279642 |
| Zea mays | 4 | 3 | CH_zma_8 | 11 | 36 | 1.69452e-21 |
| Zea mays | 7 | 3 | CH_zma_97 | 4 | 5 | 0.000000118043 |
| Anthoceros agrestis | Sc2ySwM_117 | 4 | CH_aag_152 | 4 | 17 | 0.000367909 |
| Anthoceros agrestis | Sc2ySwM_344 | 4 | CH_aag_18 | 9 | 51 | 0.00000000000248609 |
| Acer truncatum | chr7 | 4 | CH_acertr_121 | 5 | 26 | 0.0000000363482 |
| Actinidia chinensis | Lachesis_group9 | 4 | CH_ach_109 | 3 | 5 | 0.0000360947 |
| Arabidopsis lyrata | scaffold_7 | 4 | CH_aly_138 | 3 | 3 | 0.00000297347 |
| Arabidopsis thaliana | Chr4 | 4 | CH_ath_95 | 4 | 4 | 0.00000000193333 |
| Brassica carinata | ChrC09 | 4 | CH_bca_114 | 5 | 11 | 0.000000000695035 |
| Brassica carinata | Contig1030 | 4 | CH_bca_588 | 3 | 5 | 0.0000845335 |
| Brassica napus | C01 | 4 | CH_bna_350 | 3 | 3 | 0.0000135584 |
| Brassica napus | A01 | 4 | CH_bna_85 | 5 | 7 | 0.0000000000649909 |
| Brassica oleracea | C1 | 4 | CH_bol_93 | 4 | 6 | 0.000000027563 |
| Corylus avellana | 8 | 4 | CH_cav_208 | 3 | 5 | 0.000025202 |
| Chara braunii | BFEA01000546 | 4 | CH_cbr_5 | 8 | 22 | 4.3713e-17 |
| Chara braunii | BFEA01000591 | 4 | CH_cbr_69 | 3 | 3 | 0.00000633257 |
| Chara braunii | BFEA01000149 | 4 | CH_cbr_84 | 3 | 4 | 0.0000253191 |
| Ceratophyllum demersum | 1 | 4 | CH_cde_38 | 5 | 19 | 0.0000000522311 |
| Carpinus fangiana | Cfa01 | 4 | CH_cfa_40 | 5 | 6 | 0.0000000000019052 |
| Carya illinoinensis | Chr03 | 4 | CH_cil_164 | 4 | 5 | 0.0000000138406 |
| Carya illinoinensis | Chr01 | 4 | CH_cil_304 | 3 | 4 | 0.0000223283 |
| Cucumis melo | chr04 | 4 | CH_cme_55 | 4 | 4 | 0.00000000162118 |
| Carica papaya | supercontig_10 | 4 | CH_cpa_30 | 5 | 13 | 0.00000000157371 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_79 | 4 | 4 | 0.00000000358854 |
| Cucumis sativus L. | chr3 | 4 | CH_csa_71 | 4 | 5 | 0.00000000431818 |
| Daucus carota | DCARv2_Chr3 | 4 | CH_dca_62 | 6 | 15 | 0.000000000529738 |
| Davidia involucrata | GWHABJS00000010 | 4 | CH_din_199 | 3 | 4 | 0.0000122427 |
| Erythranthe guttata | scaffold_10 | 4 | CH_egut_183 | 4 | 7 | 0.000000709986 |
| Erythranthe guttata | scaffold_7 | 4 | CH_egut_303 | 3 | 4 | 0.0000929886 |
| Erythranthe guttata | scaffold_12 | 4 | CH_egut_79 | 5 | 5 | 0.0000000000170242 |
| Fragaria x ananassa | Fvb2-1 | 4 | CH_fan_268 | 3 | 3 | 0.0000083277 |
| Fragaria x ananassa | Fvb2-2 | 4 | CH_fan_52 | 5 | 7 | 0.0000000000283041 |
| Glycine max | Gm03 | 4 | CH_gma_242 | 3 | 3 | 0.00000789627 |
| Lotus japonicus | chr4 | 4 | CH_lja_167 | 3 | 3 | 0.00000625897 |
| Lonicera japonica | GWHAAZE00000009 | 4 | CH_lonja_350 | 3 | 4 | 0.0000208444 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 4 | CH_lsa_135 | 4 | 5 | 0.0000000078935 |
| Magnolia biondii | Chr07 | 4 | CH_mbi_2 | 13 | 19 | 8.12635e-36 |
| Medicago truncatula | chr8 | 4 | CH_mtr_412 | 3 | 3 | 0.00000740663 |
| Medicago truncatula | chr8 | 4 | CH_mtr_461 | 3 | 4 | 0.000029615 |
| Nelumbo nucifera | chr1 | 4 | CH_nnu_16 | 7 | 10 | 4.19029e-17 |
| Nicotiana tabacum | Nitab4.5_0000470 | 4 | CH_nta_22 | 4 | 6 | 0.000000042476 |
| Oryza sativa ssp. japonica | chr05 | 4 | CH_osa_3 | 17 | 21 | 2.34766e-41 |
| Punica granatum | NC_045133.1 | 4 | CH_pgr_225 | 3 | 4 | 0.000018911 |
| Pisum sativum | chr1LG6 | 4 | CH_psa_23 | 6 | 6 | 0.00000000000000116993 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_287 | 3 | 6 | 0.000165009 |
| Papaver somniferum | NC_039363.1 | 4 | CH_pso_547 | 3 | 7 | 0.000224525 |
| Populus trichocarpa | Chr19 | 4 | CH_ptr_139 | 4 | 4 | 0.00000000224558 |
| Phaseolus vulgaris | Chr11 | 4 | CH_pvu_2 | 17 | 21 | 1.98183e-46 |
| Quercus lobata | CM012294 | 4 | CH_qlo_392 | 4 | 5 | 0.0000000261032 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 4 | CH_rch_44 | 7 | 9 | 2.21287e-19 |
| Rhododendron simsii | chr01 | 4 | CH_rsi_194 | 4 | 8 | 0.0000000769385 |
| Salvia bowleyana | GWHASIU00000006 | 4 | CH_sbo_359 | 4 | 48 | 0.000129373 |
| Sechium edule | LG01 | 4 | CH_sed_134 | 3 | 3 | 0.00000870365 |
| Sechium edule | LG05 | 4 | CH_sed_154 | 3 | 4 | 0.0000347975 |
| Sapria himalayana | scaffold60_3140063 | 4 | CH_shi_55 | 4 | 12 | 0.0000000582303 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_250 | 3 | 5 | 0.0000201697 |
| Solanum pennellii | Spenn-ch09 | 4 | CH_spe_301 | 3 | 7 | 0.0000705577 |
| Solanum tuberosum | ST4.03ch09 | 4 | CH_stu_512 | 3 | 5 | 0.000280889 |
| Tarenaya hassleriana | NW_010966021.1 | 4 | CH_tha_110 | 3 | 5 | 0.0000708487 |
| Vitis vinifera | chr12 | 4 | CH_vvi_179 | 4 | 14 | 0.000000942055 |
| Zea mays | 1 | 4 | CH_zma_214 | 3 | 4 | 0.00011193 |
| Zea mays | 4 | 4 | CH_zma_256 | 3 | 5 | 0.000279642 |
| Zea mays | 4 | 4 | CH_zma_8 | 11 | 36 | 1.69452e-21 |
| Zea mays | 7 | 4 | CH_zma_97 | 4 | 5 | 0.000000118043 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |