Functional clusters
Information
- Type Gene Ontology
- Description exine
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr5 | 3 | CH_acertr_54 | 5 | 25 | 0.0000000000589839 |
Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_260 | 2 | 2 | 0.000198013 |
Arabidopsis thaliana | Chr1 | 3 | CH_ath_427 | 2 | 2 | 0.0000859476 |
Brassica napus | A04 | 3 | CH_bna_673 | 2 | 2 | 0.000835275 |
Brassica napus | C03 | 3 | CH_bna_674 | 2 | 2 | 0.000835275 |
Brassica oleracea | C4 | 3 | CH_bol_333 | 2 | 2 | 0.000326861 |
Brassica rapa | A04 | 3 | CH_bra_251 | 2 | 3 | 0.000386368 |
Capsicum annuum | PGAv.1.6.scaffold756 | 3 | CH_can_184 | 3 | 3 | 0.000000573281 |
Corylus avellana | 1 | 3 | CH_cav_126 | 3 | 5 | 0.000000352659 |
Cardamine hirsuta | Chr1 | 3 | CH_chi_301 | 2 | 2 | 0.000207361 |
Carya illinoinensis | Chr13 | 3 | CH_cil_470 | 2 | 2 | 0.000371897 |
Citrullus lanatus | CG_Chr05 | 3 | CH_cla_158 | 2 | 2 | 0.000532269 |
Cucumis melo | chr06 | 3 | CH_cme_85 | 3 | 3 | 0.0000000267031 |
Corchorus olitorius | AWUE01016378.1 | 3 | CH_col_40 | 3 | 4 | 0.0000020475 |
Capsella rubella | scaffold_1 | 3 | CH_cru_307 | 2 | 2 | 0.000438693 |
Cucumis sativus L. | chr3 | 3 | CH_csa_93 | 3 | 3 | 0.0000000418111 |
Daucus carota | DCARv2_Chr9 | 3 | CH_dca_152 | 3 | 5 | 0.00000122006 |
Davidia involucrata | GWHABJS00000016 | 3 | CH_din_376 | 2 | 2 | 0.000500125 |
Durio zibethinus | NW_019168048.1 | 3 | CH_dzi_119 | 3 | 4 | 0.000000451094 |
Eucalyptus grandis | Chr04 | 3 | CH_egr_200 | 6 | 43 | 0.000000000000101761 |
Eutrema salsugineum | scaffold_5 | 3 | CH_esa_207 | 2 | 2 | 0.00022845 |
Glycine max | Gm03 | 3 | CH_gma_135 | 3 | 3 | 0.0000000216099 |
Lotus japonicus | chr3 | 3 | CH_lja_285 | 2 | 2 | 0.000214523 |
Manihot esculenta | Chromosome05 | 3 | CH_mes_90 | 4 | 4 | 0.00000000000341561 |
Petunia axillaris | Peaxi162Scf00103 | 3 | CH_pax_78 | 3 | 3 | 0.000000148503 |
Phaseolus vulgaris | Chr10 | 3 | CH_pvu_254 | 2 | 2 | 0.0000734727 |
Quercus lobata | 4 | 3 | CH_qlo_183 | 5 | 10 | 0.000000000000281949 |
Sechium edule | LG12 | 3 | CH_sed_254 | 2 | 2 | 0.000428052 |
Theobroma cacao | Chromosome_2 | 3 | CH_tca_51 | 5 | 9 | 0.00000000000152213 |
Tripterygium wilfordii | NC_052248.1 | 3 | CH_twi_42 | 4 | 7 | 0.0000000000182311 |
Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_47 | 4 | 6 | 0.0000000000361089 |
Vigna mungo | CM024078.1 | 3 | CH_vmu_78 | 3 | 5 | 0.0000000626227 |
Acer truncatum | chr5 | 4 | CH_acertr_54 | 5 | 25 | 0.0000000000589839 |
Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_260 | 2 | 2 | 0.000198013 |
Arabidopsis thaliana | Chr1 | 4 | CH_ath_427 | 2 | 2 | 0.0000859476 |
Brassica napus | A04 | 4 | CH_bna_673 | 2 | 2 | 0.000835275 |
Brassica napus | C03 | 4 | CH_bna_674 | 2 | 2 | 0.000835275 |
Brassica oleracea | C4 | 4 | CH_bol_333 | 2 | 2 | 0.000326861 |
Brassica rapa | A04 | 4 | CH_bra_251 | 2 | 3 | 0.000386368 |
Capsicum annuum | PGAv.1.6.scaffold756 | 4 | CH_can_184 | 3 | 3 | 0.000000573281 |
Corylus avellana | 1 | 4 | CH_cav_126 | 3 | 5 | 0.000000352659 |
Cardamine hirsuta | Chr1 | 4 | CH_chi_301 | 2 | 2 | 0.000207361 |
Carya illinoinensis | Chr13 | 4 | CH_cil_470 | 2 | 2 | 0.000371897 |
Citrullus lanatus | CG_Chr05 | 4 | CH_cla_158 | 2 | 2 | 0.000532269 |
Cucumis melo | chr06 | 4 | CH_cme_85 | 3 | 3 | 0.0000000267031 |
Corchorus olitorius | AWUE01016378.1 | 4 | CH_col_40 | 3 | 4 | 0.0000020475 |
Capsella rubella | scaffold_1 | 4 | CH_cru_307 | 2 | 2 | 0.000438693 |
Cucumis sativus L. | chr3 | 4 | CH_csa_93 | 3 | 3 | 0.0000000418111 |
Daucus carota | DCARv2_Chr9 | 4 | CH_dca_152 | 3 | 5 | 0.00000122006 |
Davidia involucrata | GWHABJS00000016 | 4 | CH_din_376 | 2 | 2 | 0.000500125 |
Durio zibethinus | NW_019168048.1 | 4 | CH_dzi_119 | 3 | 4 | 0.000000451094 |
Eucalyptus grandis | Chr04 | 4 | CH_egr_200 | 6 | 43 | 0.000000000000101761 |
Eutrema salsugineum | scaffold_5 | 4 | CH_esa_207 | 2 | 2 | 0.00022845 |
Glycine max | Gm03 | 4 | CH_gma_135 | 3 | 3 | 0.0000000216099 |
Lotus japonicus | chr3 | 4 | CH_lja_285 | 2 | 2 | 0.000214523 |
Manihot esculenta | Chromosome05 | 4 | CH_mes_90 | 4 | 4 | 0.00000000000341561 |
Petunia axillaris | Peaxi162Scf00103 | 4 | CH_pax_78 | 3 | 3 | 0.000000148503 |
Phaseolus vulgaris | Chr10 | 4 | CH_pvu_254 | 2 | 2 | 0.0000734727 |
Quercus lobata | 4 | 4 | CH_qlo_183 | 5 | 10 | 0.000000000000281949 |
Sechium edule | LG12 | 4 | CH_sed_254 | 2 | 2 | 0.000428052 |
Theobroma cacao | Chromosome_2 | 4 | CH_tca_51 | 5 | 9 | 0.00000000000152213 |
Tripterygium wilfordii | NC_052248.1 | 4 | CH_twi_42 | 4 | 7 | 0.0000000000182311 |
Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_47 | 4 | 6 | 0.0000000000361089 |
Vigna mungo | CM024078.1 | 4 | CH_vmu_78 | 3 | 5 | 0.0000000626227 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0043674 | columella | 2 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |