Functional clusters

Information

  • Type Gene Ontology
  • Description protein tag

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr2 3 CH_acertr_1 18 33 2.53366e-49
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 3 CH_arhy_577 2 2 0.000299383
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 3 CH_arhy_578 2 2 0.000299383
Arabidopsis thaliana Chr1 3 CH_ath_153 4 7 0.000000100932
Cardamine hirsuta Chr8 3 CH_chi_345 2 2 0.000414723
Chenopodium quinoa C_Quinoa_Scaffold_1529 3 CH_cqu_533 2 2 0.000710732
Capsella rubella scaffold_8 3 CH_cru_308 2 2 0.000438693
Erigeron canadensis Conyza_canadensis_scaffold:5 3 CH_eca_425 2 2 0.000448722
Eucalyptus grandis Chr11 3 CH_egr_770 2 2 0.000175582
Eutrema salsugineum scaffold_2 3 CH_esa_246 2 2 0.000456899
Lactuca sativa Lsat_1_v8_lg_9 3 CH_lsa_395 2 2 0.000154202
Medicago truncatula chr3 3 CH_mtr_495 2 2 0.0000410863
Olea europaea chr21 3 CH_oeu_342 2 2 0.000533789
Prunus persica Pp04 3 CH_ppe_192 3 3 0.0000000834721
Populus trichocarpa Chr02 3 CH_ptr_400 2 2 0.000346801
Striga asiatica scaffold8 3 CH_sas_62 2 2 0.0000625371
Salix brachista GWHAAZH00000002 3 CH_sbr_326 2 2 0.000378084
Solanum tuberosum ST4.03ch10 3 CH_stu_297 3 3 0.00000606639
Tarenaya hassleriana NW_010966177.1 3 CH_tha_189 2 2 0.00069847
Tripterygium wilfordii NC_052250.1 3 CH_twi_250 2 2 0.000167364
Utricularia gibba unitig_747 3 CH_ugi_132 2 2 0.000492287
Vitis vinifera chrUn 3 CH_vvi_423 2 2 0.00076063
Acer truncatum chr2 4 CH_acertr_1 18 33 2.53366e-49
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 4 CH_arhy_577 2 2 0.000299383
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 4 CH_arhy_578 2 2 0.000299383
Arabidopsis thaliana Chr1 4 CH_ath_153 4 7 0.000000100932
Cardamine hirsuta Chr8 4 CH_chi_345 2 2 0.000414723
Chenopodium quinoa C_Quinoa_Scaffold_1529 4 CH_cqu_533 2 2 0.000710732
Capsella rubella scaffold_8 4 CH_cru_308 2 2 0.000438693
Erigeron canadensis Conyza_canadensis_scaffold:5 4 CH_eca_425 2 2 0.000448722
Eucalyptus grandis Chr11 4 CH_egr_770 2 2 0.000175582
Eutrema salsugineum scaffold_2 4 CH_esa_246 2 2 0.000456899
Lactuca sativa Lsat_1_v8_lg_9 4 CH_lsa_395 2 2 0.000154202
Medicago truncatula chr3 4 CH_mtr_495 2 2 0.0000410863
Olea europaea chr21 4 CH_oeu_342 2 2 0.000533789
Prunus persica Pp04 4 CH_ppe_192 3 3 0.0000000834721
Populus trichocarpa Chr02 4 CH_ptr_400 2 2 0.000346801
Striga asiatica scaffold8 4 CH_sas_62 2 2 0.0000625371
Salix brachista GWHAAZH00000002 4 CH_sbr_326 2 2 0.000378084
Solanum tuberosum ST4.03ch10 4 CH_stu_297 3 3 0.00000606639
Tarenaya hassleriana NW_010966177.1 4 CH_tha_189 2 2 0.00069847
Tripterygium wilfordii NC_052250.1 4 CH_twi_250 2 2 0.000167364
Utricularia gibba unitig_747 4 CH_ugi_132 2 2 0.000492287
Vitis vinifera chrUn 4 CH_vvi_423 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001