Functional clusters
Information
- Type Gene Ontology
- Description oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 3 | CH_acertr_42 | 6 | 9 | 0.00000000000532895 |
| Arabidopsis lyrata | scaffold_9 | 3 | CH_aly_141 | 4 | 7 | 0.00000408578 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 3 | CH_arhy_463 | 3 | 3 | 0.0000533905 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 3 | CH_arhy_464 | 3 | 3 | 0.0000533905 |
| Arabidopsis thaliana | Chr4 | 3 | CH_ath_403 | 3 | 4 | 0.0000747218 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 3 | CH_bvu_145 | 3 | 3 | 0.0000158345 |
| Corylus avellana | 10 | 3 | CH_cav_202 | 3 | 3 | 0.0000202806 |
| Citrus clementina | scaffold_6 | 3 | CH_ccl_154 | 4 | 4 | 0.0000000453879 |
| Corchorus olitorius | AWUE01015427.1 | 3 | CH_col_16 | 5 | 5 | 0.000000000109402 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2493 | 3 | CH_cqu_317 | 3 | 3 | 0.0000332727 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_190 | 4 | 9 | 0.0000218803 |
| Fragaria x ananassa | Fvb6-1 | 3 | CH_fan_329 | 4 | 13 | 0.0000361078 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_183 | 4 | 9 | 0.00000315129 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_399 | 3 | 7 | 0.000991343 |
| Lotus japonicus | chr6 | 3 | CH_lja_194 | 3 | 3 | 0.0000311415 |
| Malus domestica | Chr04 | 3 | CH_mdo_216 | 4 | 5 | 0.00000015906 |
| Medicago truncatula | chr4 | 3 | CH_mtr_224 | 4 | 4 | 0.00000000654738 |
| Prunus persica | Pp06 | 3 | CH_ppe_275 | 3 | 3 | 0.0000217028 |
| Pisum sativum | chr5LG3 | 3 | CH_psa_175 | 3 | 3 | 0.0000165715 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_176 | 3 | 3 | 0.0000165715 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_404 | 4 | 14 | 0.0000216995 |
| Papaver somniferum | NC_039360.1 | 3 | CH_pso_452 | 4 | 18 | 0.0000661879 |
| Populus trichocarpa | Chr16 | 3 | CH_ptr_299 | 3 | 3 | 0.0000495129 |
| Quercus lobata | 7 | 3 | CH_qlo_687 | 3 | 3 | 0.0000365415 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 3 | CH_rch_30 | 11 | 31 | 2.53674e-22 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_363 | 4 | 8 | 0.00000180148 |
| Salix brachista | GWHAAZH00000016 | 3 | CH_sbr_262 | 3 | 4 | 0.000107021 |
| Theobroma cacao | Chromosome_5 | 3 | CH_tca_125 | 4 | 4 | 0.0000000241331 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 3 | CH_tpr_168 | 3 | 3 | 0.0000197696 |
| Vigna mungo | CM024078.1 | 3 | CH_vmu_202 | 3 | 4 | 0.00012416 |
| Acer truncatum | chr8 | 4 | CH_acertr_42 | 6 | 9 | 0.00000000000532895 |
| Arabidopsis lyrata | scaffold_9 | 4 | CH_aly_141 | 4 | 7 | 0.00000408578 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 4 | CH_arhy_463 | 3 | 3 | 0.0000533905 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 4 | CH_arhy_464 | 3 | 3 | 0.0000533905 |
| Arabidopsis thaliana | Chr4 | 4 | CH_ath_403 | 3 | 4 | 0.0000747218 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 4 | CH_bvu_145 | 3 | 3 | 0.0000158345 |
| Corylus avellana | 10 | 4 | CH_cav_202 | 3 | 3 | 0.0000202806 |
| Citrus clementina | scaffold_6 | 4 | CH_ccl_154 | 4 | 4 | 0.0000000453879 |
| Corchorus olitorius | AWUE01015427.1 | 4 | CH_col_16 | 5 | 5 | 0.000000000109402 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2493 | 4 | CH_cqu_317 | 3 | 3 | 0.0000332727 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_190 | 4 | 9 | 0.0000218803 |
| Fragaria x ananassa | Fvb6-1 | 4 | CH_fan_329 | 4 | 13 | 0.0000361078 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_183 | 4 | 9 | 0.00000315129 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_399 | 3 | 7 | 0.000991343 |
| Lotus japonicus | chr6 | 4 | CH_lja_194 | 3 | 3 | 0.0000311415 |
| Malus domestica | Chr04 | 4 | CH_mdo_216 | 4 | 5 | 0.00000015906 |
| Medicago truncatula | chr4 | 4 | CH_mtr_224 | 4 | 4 | 0.00000000654738 |
| Prunus persica | Pp06 | 4 | CH_ppe_275 | 3 | 3 | 0.0000217028 |
| Pisum sativum | chr5LG3 | 4 | CH_psa_175 | 3 | 3 | 0.0000165715 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_176 | 3 | 3 | 0.0000165715 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_404 | 4 | 14 | 0.0000216995 |
| Papaver somniferum | NC_039360.1 | 4 | CH_pso_452 | 4 | 18 | 0.0000661879 |
| Populus trichocarpa | Chr16 | 4 | CH_ptr_299 | 3 | 3 | 0.0000495129 |
| Quercus lobata | 7 | 4 | CH_qlo_687 | 3 | 3 | 0.0000365415 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 4 | CH_rch_30 | 11 | 31 | 2.53674e-22 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_363 | 4 | 8 | 0.00000180148 |
| Salix brachista | GWHAAZH00000016 | 4 | CH_sbr_262 | 3 | 4 | 0.000107021 |
| Theobroma cacao | Chromosome_5 | 4 | CH_tca_125 | 4 | 4 | 0.0000000241331 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 4 | CH_tpr_168 | 3 | 3 | 0.0000197696 |
| Vigna mungo | CM024078.1 | 4 | CH_vmu_202 | 3 | 4 | 0.00012416 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0004604 | phosphoadenylyl-sulfate reductase (thioredoxin) activity | 4 |
| GO:0008113 | peptide-methionine (S)-S-oxide reductase activity | 38 |
| GO:0033743 | peptide-methionine (R)-S-oxide reductase activity | 34 |
| GO:0033744 | L-methionine:thioredoxin-disulfide S-oxidoreductase activity | 2 |
| GO:0036456 | L-methionine-(S)-S-oxide reductase activity | 2 |
| GO:0070191 | methionine-R-sulfoxide reductase activity | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |