Functional clusters

Information

  • Type Gene Ontology
  • Description oxidoreductase activity, acting on NAD(P)H

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 3 CH_aar_55 5 5 0.00000000365312
Brassica napus C09 3 CH_bna_29 11 39 2.64833e-16
Brassica napus C09 3 CH_bna_325 4 5 0.00000829135
Brassica napus C07 3 CH_bna_675 3 3 0.00084413
Brassica oleracea Boleracea_scaffold_45 3 CH_bol_150 8 52 0.000000539412
Brassica oleracea Boleracea_scaffold_46 3 CH_bol_167 5 8 0.00000133264
Brassica oleracea Boleracea_scaffold_44 3 CH_bol_187 5 9 0.00000299026
Brassica oleracea Boleracea_scaffold_35 3 CH_bol_23 10 21 0.00000000000000283657
Brassica oleracea Boleracea_scaffold_29 3 CH_bol_38 11 50 0.000000000000914761
Brassica oleracea Boleracea_scaffold_49 3 CH_bol_52 7 11 0.0000000000823977
Brassica oleracea C2 3 CH_bol_56 8 20 0.000000000098968
Brassica oleracea Boleracea_scaffold_37 3 CH_bol_67 7 14 0.000000000849673
Brassica oleracea C9 3 CH_bol_72 7 16 0.00000000281622
Brassica rapa Brapa_scaffold_48 3 CH_bra_126 8 67 0.00000480975
Cucumis sativus L. scaffold18_1 3 CH_csa_146 4 5 0.0000100168
Erythranthe guttata scaffold_4 3 CH_egut_93 6 8 0.000000000304477
Gossypium hirsutum A02 3 CH_ghi_489 4 7 0.0001851
Glycine max Gm15 3 CH_gma_341 4 8 0.000121577
Helianthus annuus HanXRQChr17 3 CH_han_136 7 9 0.0000000000692879
Helianthus annuus HanXRQChr09 3 CH_han_186 6 7 0.00000000304344
Helianthus annuus HanXRQChr01 3 CH_han_246 5 5 0.0000000977794
Helianthus annuus HanXRQChr11 3 CH_han_300 5 6 0.000000584483
Helianthus annuus HanXRQChr17 3 CH_han_343 5 7 0.00000203804
Lonicera japonica GWHAAZE00000002 3 CH_lonja_129 11 76 0.00000000000696342
Lactuca sativa Lsat_1_v8_lg_6 3 CH_lsa_237 4 4 0.00000187345
Marchantia polymorpha scaffold_48 3 CH_mpo_57 4 5 0.00000329169
Medicago truncatula scaffold0002 3 CH_mtr_705 5 26 0.000558234
Nelumbo nucifera scaffold064 3 CH_nnu_107 5 9 0.000000464149
Nelumbo nucifera chr1 3 CH_nnu_127 4 4 0.00000154177
Solanum lycopersicum SL4.0ch02 3 CH_sly_74 8 12 0.00000000000422348
Solanum lycopersicum SL4.0ch11 3 CH_sly_97 7 10 0.000000000221715
Vitis vinifera chrUn 3 CH_vvi_123 6 13 0.0000000164818
Aethionema arabicum LG-5 4 CH_aar_55 5 5 0.00000000365312
Brassica napus C09 4 CH_bna_29 11 39 2.64833e-16
Brassica napus C09 4 CH_bna_325 4 5 0.00000829135
Brassica napus C07 4 CH_bna_675 3 3 0.00084413
Brassica oleracea Boleracea_scaffold_45 4 CH_bol_150 8 52 0.000000539412
Brassica oleracea Boleracea_scaffold_46 4 CH_bol_167 5 8 0.00000133264
Brassica oleracea Boleracea_scaffold_44 4 CH_bol_187 5 9 0.00000299026
Brassica oleracea Boleracea_scaffold_35 4 CH_bol_23 10 21 0.00000000000000283657
Brassica oleracea Boleracea_scaffold_29 4 CH_bol_38 11 50 0.000000000000914761
Brassica oleracea Boleracea_scaffold_49 4 CH_bol_52 7 11 0.0000000000823977
Brassica oleracea C2 4 CH_bol_56 8 20 0.000000000098968
Brassica oleracea Boleracea_scaffold_37 4 CH_bol_67 7 14 0.000000000849673
Brassica oleracea C9 4 CH_bol_72 7 16 0.00000000281622
Brassica rapa Brapa_scaffold_48 4 CH_bra_126 8 67 0.00000480975
Cucumis sativus L. scaffold18_1 4 CH_csa_146 4 5 0.0000100168
Erythranthe guttata scaffold_4 4 CH_egut_93 6 8 0.000000000304477
Gossypium hirsutum A02 4 CH_ghi_489 4 7 0.0001851
Glycine max Gm15 4 CH_gma_341 4 8 0.000121577
Helianthus annuus HanXRQChr17 4 CH_han_136 7 9 0.0000000000692879
Helianthus annuus HanXRQChr09 4 CH_han_186 6 7 0.00000000304344
Helianthus annuus HanXRQChr01 4 CH_han_246 5 5 0.0000000977794
Helianthus annuus HanXRQChr11 4 CH_han_300 5 6 0.000000584483
Helianthus annuus HanXRQChr17 4 CH_han_343 5 7 0.00000203804
Lonicera japonica GWHAAZE00000002 4 CH_lonja_129 11 76 0.00000000000696342
Lactuca sativa Lsat_1_v8_lg_6 4 CH_lsa_237 4 4 0.00000187345
Marchantia polymorpha scaffold_48 4 CH_mpo_57 4 5 0.00000329169
Medicago truncatula scaffold0002 4 CH_mtr_705 5 26 0.000558234
Nelumbo nucifera scaffold064 4 CH_nnu_107 5 9 0.000000464149
Nelumbo nucifera chr1 4 CH_nnu_127 4 4 0.00000154177
Solanum lycopersicum SL4.0ch02 4 CH_sly_74 8 12 0.00000000000422348
Solanum lycopersicum SL4.0ch11 4 CH_sly_97 7 10 0.000000000221715
Vitis vinifera chrUn 4 CH_vvi_123 6 13 0.0000000164818

Available child term results

Ontology identifier Description Number of clusters
GO:0003954 NADH dehydrogenase activity 6
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 12
GO:0003958 NADPH-hemoprotein reductase activity 12
GO:0003959 NADPH dehydrogenase activity 16
GO:0004128 cytochrome-b5 reductase activity, acting on NAD(P)H 2
GO:0008137 NADH dehydrogenase (ubiquinone) activity 24
GO:0008746 NAD(P)+ transhydrogenase activity 4
GO:0008753 NADPH dehydrogenase (quinone) activity 4
GO:0016174 NAD(P)H oxidase H2O2-forming activity 2
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 2
GO:0016656 monodehydroascorbate reductase (NADH) activity 2
GO:0046424 ferulate 5-hydroxylase activity 6
GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001