Functional clusters
Information
- Type Gene Ontology
- Description aerenchyma formation
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 3 | CH_arhy_281 | 3 | 3 | 0.000000161337 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 3 | CH_arhy_313 | 3 | 4 | 0.000000645288 |
| Corylus avellana | 4 | 3 | CH_cav_380 | 2 | 2 | 0.000460017 |
| Citrus clementina | scaffold_5 | 3 | CH_ccl_229 | 3 | 6 | 0.00000403601 |
| Carpinus fangiana | Cfa08 | 3 | CH_cfa_114 | 3 | 4 | 0.000000137654 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_344 | 2 | 2 | 0.000414723 |
| Carya illinoinensis | Chr11 | 3 | CH_cil_71 | 5 | 5 | 0.0000000000000279015 |
| Daucus carota | DCARv2_Chr7 | 3 | CH_dca_415 | 2 | 2 | 0.000956663 |
| Eucalyptus grandis | Chr11 | 3 | CH_egr_155 | 6 | 7 | 3.24834e-16 |
| Glycine max | Gm06 | 3 | CH_gma_174 | 3 | 3 | 0.000000259319 |
| Lotus japonicus | chr1 | 3 | CH_lja_362 | 2 | 2 | 0.000715077 |
| Malus domestica | Chr14 | 3 | CH_mdo_715 | 2 | 2 | 0.000796344 |
| Prunus persica | Pp05 | 3 | CH_ppe_209 | 3 | 4 | 0.000000333857 |
| Phaseolus vulgaris | Chr09 | 3 | CH_pvu_377 | 2 | 2 | 0.000734727 |
| Quercus lobata | 10 | 3 | CH_qlo_179 | 5 | 9 | 0.000000000000140984 |
| Rhododendron simsii | chr08 | 3 | CH_rsi_466 | 2 | 2 | 0.000387184 |
| Sechium edule | LG08 | 3 | CH_sed_253 | 2 | 2 | 0.000428052 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_484 | 4 | 6 | 0.00000000520571 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_354 | 2 | 2 | 0.000557543 |
| Vigna mungo | CM024072.1 | 3 | CH_vmu_314 | 2 | 2 | 0.000646141 |
| Vitis vinifera | chr17 | 3 | CH_vvi_188 | 3 | 6 | 0.00000173524 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 4 | CH_arhy_281 | 3 | 3 | 0.000000161337 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 4 | CH_arhy_313 | 3 | 4 | 0.000000645288 |
| Corylus avellana | 4 | 4 | CH_cav_380 | 2 | 2 | 0.000460017 |
| Citrus clementina | scaffold_5 | 4 | CH_ccl_229 | 3 | 6 | 0.00000403601 |
| Carpinus fangiana | Cfa08 | 4 | CH_cfa_114 | 3 | 4 | 0.000000137654 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_344 | 2 | 2 | 0.000414723 |
| Carya illinoinensis | Chr11 | 4 | CH_cil_71 | 5 | 5 | 0.0000000000000279015 |
| Daucus carota | DCARv2_Chr7 | 4 | CH_dca_415 | 2 | 2 | 0.000956663 |
| Eucalyptus grandis | Chr11 | 4 | CH_egr_155 | 6 | 7 | 3.24834e-16 |
| Glycine max | Gm06 | 4 | CH_gma_174 | 3 | 3 | 0.000000259319 |
| Lotus japonicus | chr1 | 4 | CH_lja_362 | 2 | 2 | 0.000715077 |
| Malus domestica | Chr14 | 4 | CH_mdo_715 | 2 | 2 | 0.000796344 |
| Prunus persica | Pp05 | 4 | CH_ppe_209 | 3 | 4 | 0.000000333857 |
| Phaseolus vulgaris | Chr09 | 4 | CH_pvu_377 | 2 | 2 | 0.000734727 |
| Quercus lobata | 10 | 4 | CH_qlo_179 | 5 | 9 | 0.000000000000140984 |
| Rhododendron simsii | chr08 | 4 | CH_rsi_466 | 2 | 2 | 0.000387184 |
| Sechium edule | LG08 | 4 | CH_sed_253 | 2 | 2 | 0.000428052 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_484 | 4 | 6 | 0.00000000520571 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_354 | 2 | 2 | 0.000557543 |
| Vigna mungo | CM024072.1 | 4 | CH_vmu_314 | 2 | 2 | 0.000646141 |
| Vitis vinifera | chr17 | 4 | CH_vvi_188 | 3 | 6 | 0.00000173524 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |