Functional clusters

Information

  • Type Gene Ontology
  • Description acireductone dioxygenase [iron(II)-requiring] activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr4 3 CH_acertr_105 4 20 0.0000000254391
Actinidia chinensis Lachesis_group3 3 CH_ach_202 2 2 0.000325928
Avicennia marina ScioBoG_12795_HRSCAF_12848 3 CH_ama_86 2 2 0.000258665
Aquilegia oxysepala CHR02 3 CH_aox_184 2 2 0.0000801989
Amborella trichopoda AmTr_v1.0_scaffold00002 3 CH_atr_208 2 2 0.0000794407
Camellia sinensis var. sinensis Chr9 3 CH_camsi_683 2 2 0.000275128
Cannabis sativa NC_044376.1 3 CH_cansat_219 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold1437 3 CH_can_377 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 3 CH_car_142 2 3 0.000233481
Coffea canephora chr3 3 CH_ccan_218 2 7 0.0000638831
Citrus clementina scaffold_9 3 CH_ccl_310 2 2 0.0000820311
Carya illinoinensis Chr02 3 CH_cil_407 2 2 0.000185948
Carica papaya supercontig_44 3 CH_cpa_160 2 2 0.0000950661
Daucus carota DCARv2_Chr1 3 CH_dca_301 2 2 0.000191333
Durio zibethinus NW_019167904.1 3 CH_dzi_239 2 2 0.000139047
Eucalyptus grandis Chr02 3 CH_egr_513 3 6 0.00000102744
Erythranthe guttata scaffold_7 3 CH_egut_284 2 2 0.0000728147
Fragaria vesca Fvb4 3 CH_fve_252 2 2 0.0000589102
Glycine max Gm20 3 CH_gma_379 2 2 0.000227734
Glycine max Gm10 3 CH_gma_497 2 3 0.000683172
Lonicera japonica GWHAAZE00000006 3 CH_lonja_497 2 2 0.000359324
Malus domestica Chr16 3 CH_mdo_487 2 2 0.000113763
Medicago truncatula chr1 3 CH_mtr_548 2 3 0.000123256
Nelumbo nucifera chr1 3 CH_nnu_191 2 3 0.0000481684
Nicotiana tabacum Nitab4.5_0000090 3 CH_nta_26 3 4 0.0000000722405
Olea europaea chr22 3 CH_oeu_224 2 2 0.000160137
Oryza sativa ssp. japonica chr10 3 CH_osa_388 2 2 0.000316874
Petunia axillaris Peaxi162Scf00316 3 CH_pax_27 4 5 0.00000000000522419
Prunus persica Pp01 3 CH_ppe_323 2 2 0.0000745962
Pisum sativum chr6LG2 3 CH_psa_308 2 4 0.000312965
Papaver somniferum NW_020627707.1 3 CH_pso_586 2 2 0.000337941
Populus trichocarpa Chr08 3 CH_ptr_360 2 2 0.0001734
Phaseolus vulgaris Chr07 3 CH_pvu_279 2 3 0.00022041
Quercus lobata 6 3 CH_qlo_879 2 4 0.000309757
Rosa chinensis RcHm_v2.0_Chr4 3 CH_rch_197 3 3 0.00000000238391
Rhododendron simsii chr04 3 CH_rsi_348 2 2 0.0000645307
Striga asiatica scaffold191 3 CH_sas_78 2 2 0.000187611
Solanum lycopersicum SL4.0ch09 3 CH_sly_124 3 3 0.00000000516764
Schrenkiella parvula ch7-4 3 CH_spa_158 2 2 0.000236202
Solanum pennellii Spenn-ch09 3 CH_spe_94 3 3 0.00000000296764
Solanum tuberosum ST4.03ch09 3 CH_stu_190 3 3 0.0000000393922
Trochodendron aralioides group17 3 CH_tar_449 2 2 0.000600366
Theobroma cacao Chromosome_4 3 CH_tca_275 2 2 0.0000732386
Tripterygium wilfordii NC_052232.1 3 CH_twi_247 2 2 0.000167364
Vigna mungo CM024071.1 3 CH_vmu_223 2 3 0.000193836
Vitis vinifera chr5 3 CH_vvi_266 2 2 0.000076063
Acer truncatum chr4 4 CH_acertr_105 4 20 0.0000000254391
Actinidia chinensis Lachesis_group3 4 CH_ach_202 2 2 0.000325928
Avicennia marina ScioBoG_12795_HRSCAF_12848 4 CH_ama_86 2 2 0.000258665
Aquilegia oxysepala CHR02 4 CH_aox_184 2 2 0.0000801989
Amborella trichopoda AmTr_v1.0_scaffold00002 4 CH_atr_208 2 2 0.0000794407
Camellia sinensis var. sinensis Chr9 4 CH_camsi_683 2 2 0.000275128
Cannabis sativa NC_044376.1 4 CH_cansat_219 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold1437 4 CH_can_377 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 4 CH_car_142 2 3 0.000233481
Coffea canephora chr3 4 CH_ccan_218 2 7 0.0000638831
Citrus clementina scaffold_9 4 CH_ccl_310 2 2 0.0000820311
Carya illinoinensis Chr02 4 CH_cil_407 2 2 0.000185948
Carica papaya supercontig_44 4 CH_cpa_160 2 2 0.0000950661
Daucus carota DCARv2_Chr1 4 CH_dca_301 2 2 0.000191333
Durio zibethinus NW_019167904.1 4 CH_dzi_239 2 2 0.000139047
Eucalyptus grandis Chr02 4 CH_egr_513 3 6 0.00000102744
Erythranthe guttata scaffold_7 4 CH_egut_284 2 2 0.0000728147
Fragaria vesca Fvb4 4 CH_fve_252 2 2 0.0000589102
Glycine max Gm20 4 CH_gma_379 2 2 0.000227734
Glycine max Gm10 4 CH_gma_497 2 3 0.000683172
Lonicera japonica GWHAAZE00000006 4 CH_lonja_497 2 2 0.000359324
Malus domestica Chr16 4 CH_mdo_487 2 2 0.000113763
Medicago truncatula chr1 4 CH_mtr_548 2 3 0.000123256
Nelumbo nucifera chr1 4 CH_nnu_191 2 3 0.0000481684
Nicotiana tabacum Nitab4.5_0000090 4 CH_nta_26 3 4 0.0000000722405
Olea europaea chr22 4 CH_oeu_224 2 2 0.000160137
Oryza sativa ssp. japonica chr10 4 CH_osa_388 2 2 0.000316874
Petunia axillaris Peaxi162Scf00316 4 CH_pax_27 4 5 0.00000000000522419
Prunus persica Pp01 4 CH_ppe_323 2 2 0.0000745962
Pisum sativum chr6LG2 4 CH_psa_308 2 4 0.000312965
Papaver somniferum NW_020627707.1 4 CH_pso_586 2 2 0.000337941
Populus trichocarpa Chr08 4 CH_ptr_360 2 2 0.0001734
Phaseolus vulgaris Chr07 4 CH_pvu_279 2 3 0.00022041
Quercus lobata 6 4 CH_qlo_879 2 4 0.000309757
Rosa chinensis RcHm_v2.0_Chr4 4 CH_rch_197 3 3 0.00000000238391
Rhododendron simsii chr04 4 CH_rsi_348 2 2 0.0000645307
Striga asiatica scaffold191 4 CH_sas_78 2 2 0.000187611
Solanum lycopersicum SL4.0ch09 4 CH_sly_124 3 3 0.00000000516764
Schrenkiella parvula ch7-4 4 CH_spa_158 2 2 0.000236202
Solanum pennellii Spenn-ch09 4 CH_spe_94 3 3 0.00000000296764
Solanum tuberosum ST4.03ch09 4 CH_stu_190 3 3 0.0000000393922
Trochodendron aralioides group17 4 CH_tar_449 2 2 0.000600366
Theobroma cacao Chromosome_4 4 CH_tca_275 2 2 0.0000732386
Tripterygium wilfordii NC_052232.1 4 CH_twi_247 2 2 0.000167364
Vigna mungo CM024071.1 4 CH_vmu_223 2 3 0.000193836
Vitis vinifera chr5 4 CH_vvi_266 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001