Functional clusters

Information

  • Type Gene Ontology
  • Description phloem development

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 3 CH_acertr_228 3 3 0.0000072239
Acer truncatum chr1 3 CH_acertr_405 3 7 0.000252373
Actinidia chinensis Lachesis_group11 3 CH_ach_16 5 5 0.0000000000042964
Avicennia marina ScioBoG_102834_HRSCAF_103055 3 CH_ama_7 5 5 0.0000000000139513
Aquilegia oxysepala CHR05 3 CH_aox_27 5 9 0.000000000241542
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 3 CH_arhy_125 7 18 0.00000000000069167
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 3 CH_arhy_131 7 20 0.00000000000168245
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 3 CH_arhy_491 4 17 0.0000926026
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 3 CH_arhy_625 3 5 0.000459477
Amborella trichopoda AmTr_v1.0_scaffold00166 3 CH_atr_72 4 5 0.00000000537573
Camellia sinensis var. sinensis Chr10 3 CH_camsi_437 3 3 0.0000128055
Camellia sinensis var. sinensis Chr1 3 CH_camsi_87 6 11 0.00000000000124851
Cannabis sativa NC_044373.1 3 CH_cansat_33 6 6 0.00000000000000632601
Cannabis sativa NC_044376.1 3 CH_cansat_37 7 16 0.0000000000000472817
Cicer arietinum L. Ca_LG4_v3 3 CH_car_22 4 5 0.0000000216322
Corylus avellana 9 3 CH_cav_108 4 6 0.000000121257
Coffea canephora chr11 3 CH_ccan_374 2 2 0.000579211
Carpinus fangiana Cfa03 3 CH_cfa_167 4 8 0.00000475832
Carpinus fangiana Cfa02 3 CH_cfa_35 6 6 0.0000000000000910292
Carpinus fangiana Cfa03 3 CH_cfa_66 5 6 0.000000000480234
Carpinus fangiana Cfa03 3 CH_cfa_67 5 6 0.000000000480234
Carya illinoinensis Chr01 3 CH_cil_19 10 12 5.35087e-24
Carya illinoinensis Chr11 3 CH_cil_324 3 3 0.0000569383
Carya illinoinensis Chr04 3 CH_cil_325 3 3 0.0000569383
Citrullus lanatus CG_Chr06 3 CH_cla_4 7 7 2.97736e-18
Cucumis melo chr05 3 CH_cme_19 7 12 9.35828e-16
Chenopodium quinoa C_Quinoa_Scaffold_3216 3 CH_cqu_306 3 3 0.0000220415
Cucumis sativus L. chr2 3 CH_csa_24 7 11 0.00000000000000102082
Davidia involucrata GWHABJS00000014 3 CH_din_185 3 3 0.00000577803
Erigeron canadensis Conyza_canadensis_scaffold:4 3 CH_eca_34 6 21 0.00000000000600325
Eucalyptus grandis Chr09 3 CH_egr_209 6 7 0.000000000000175484
Eucalyptus grandis Chr08 3 CH_egr_650 3 3 0.0000336305
Eucalyptus grandis Chr08 3 CH_egr_86 9 12 3.0276e-21
Erythranthe guttata scaffold_5 3 CH_egut_207 3 3 0.00000445382
Fragaria x ananassa Fvb4-1 3 CH_fan_113 4 4 0.0000000136984
Fragaria x ananassa Fvb4-4 3 CH_fan_64 5 7 0.000000000164855
Fragaria x ananassa Fvb4-2 3 CH_fan_90 5 10 0.00000000197542
Fragaria vesca Fvb4 3 CH_fve_102 4 4 0.00000000651779
Fragaria vesca Fvb4 3 CH_fve_175 4 11 0.00000214334
Gossypium hirsutum A03 3 CH_ghi_123 6 15 0.0000000000551772
Gossypium hirsutum D03 3 CH_ghi_191 5 12 0.0000000125916
Gossypium hirsutum D04 3 CH_ghi_394 3 3 0.0000312928
Glycine max Gm20 3 CH_gma_193 4 6 0.000000777006
Glycine max Gm10 3 CH_gma_41 6 6 0.0000000000000457854
Gossypium raimondii Chr12 3 CH_gra_189 3 3 0.0000175038
Gossypium raimondii Chr03 3 CH_gra_97 5 12 0.0000000069649
Helianthus annuus HanXRQChr07 3 CH_han_388 3 3 0.0000100686
Helianthus annuus HanXRQChr17 3 CH_han_467 3 4 0.0000402572
Lupinus albus Lalb_Chr02 3 CH_lal_214 3 3 0.0000295004
Lotus japonicus chr5 3 CH_lja_56 5 7 0.000000000332063
Malus domestica Chr13 3 CH_mdo_144 4 4 0.00000000514776
Malus domestica Chr16 3 CH_mdo_410 3 4 0.0000387678
Manihot esculenta Chromosome17 3 CH_mes_250 3 3 0.0000163602
Medicago truncatula chr1 3 CH_mtr_57 8 23 1.30285e-16
Nelumbo nucifera chr8 3 CH_nnu_175 4 22 0.0000426852
Punica granatum NC_045128.1 3 CH_pgr_129 4 6 0.0000000736248
Prunus persica Pp01 3 CH_ppe_27 9 14 1.87496e-20
Prunus persica Pp01 3 CH_ppe_285 3 3 0.0000273455
Pisum sativum chr6LG2 3 CH_psa_158 3 3 0.00000628574
Pisum sativum chr6LG2 3 CH_psa_62 4 4 0.00000000311508
Papaver somniferum NW_020643262.1 3 CH_pso_321 3 3 0.00000154101
Populus trichocarpa Chr10 3 CH_ptr_163 4 4 0.0000000158772
Populus trichocarpa Chr01 3 CH_ptr_98 5 5 0.0000000000119312
Quercus lobata CM012294 3 CH_qlo_317 5 7 0.00000000236667
Quercus lobata 3 3 CH_qlo_360 6 23 0.00000001302
Quercus lobata 6 3 CH_qlo_51 10 12 1.25114e-23
Quercus lobata CM012294 3 CH_qlo_605 4 8 0.00000663024
Quercus lobata 3 3 CH_qlo_761 3 3 0.000078369
Quercus lobata 5 3 CH_qlo_89 8 9 1.48759e-18
Rosa chinensis RcHm_v2.0_Chr4 3 CH_rch_273 4 7 0.0000000993475
Rosa chinensis RcHm_v2.0_Chr4 3 CH_rch_93 7 22 0.0000000000000352849
Rhododendron simsii chr05 3 CH_rsi_211 4 6 0.000000128365
Rhododendron simsii chr08 3 CH_rsi_382 3 5 0.000126293
Striga asiatica scaffold87 3 CH_sas_65 3 6 0.0000796987
Salvia bowleyana GWHASIU00000002 3 CH_sbo_252 3 3 0.00000478196
Salvia bowleyana GWHASIU00000004 3 CH_sbo_253 3 3 0.00000478196
Salix brachista GWHAAZH00000010 3 CH_sbr_203 3 3 0.0000154864
Salix brachista GWHAAZH00000016 3 CH_sbr_42 6 9 0.000000000000431717
Simmondsia chinensis GWHAASQ00000010 3 CH_sci_118 3 3 0.0000144629
Sechium edule LG09 3 CH_sed_19 8 10 1.05101e-18
Solanum lycopersicum SL4.0ch05 3 CH_sly_256 3 3 0.00000500744
Solanum pennellii Spenn-ch05 3 CH_spe_240 3 4 0.0000157828
Solanum tuberosum ST4.03ch05 3 CH_stu_274 3 3 0.00000267867
Selenicereus undatus Scaffold_33676 3 CH_sun_34 4 5 0.0000000136928
Trochodendron aralioides group8 3 CH_tar_120 4 6 0.0000000861522
Tripterygium wilfordii NC_052237.1 3 CH_twi_175 3 3 0.0000152943
Vigna mungo CM024071.1 3 CH_vmu_31 6 12 0.0000000000138496
Vitis vinifera chr1 3 CH_vvi_218 3 3 0.00000989371
Vitis vinifera chr14 3 CH_vvi_56 6 7 0.0000000000000155411
Acer truncatum chr11 4 CH_acertr_228 3 3 0.0000072239
Acer truncatum chr1 4 CH_acertr_405 3 7 0.000252373
Actinidia chinensis Lachesis_group11 4 CH_ach_16 5 5 0.0000000000042964
Avicennia marina ScioBoG_102834_HRSCAF_103055 4 CH_ama_7 5 5 0.0000000000139513
Aquilegia oxysepala CHR05 4 CH_aox_27 5 9 0.000000000241542
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 4 CH_arhy_125 7 18 0.00000000000069167
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 4 CH_arhy_131 7 20 0.00000000000168245
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 4 CH_arhy_491 4 17 0.0000926026
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 4 CH_arhy_625 3 5 0.000459477
Amborella trichopoda AmTr_v1.0_scaffold00166 4 CH_atr_72 4 5 0.00000000537573
Camellia sinensis var. sinensis Chr10 4 CH_camsi_437 3 3 0.0000128055
Camellia sinensis var. sinensis Chr1 4 CH_camsi_87 6 11 0.00000000000124851
Cannabis sativa NC_044373.1 4 CH_cansat_33 6 6 0.00000000000000632601
Cannabis sativa NC_044376.1 4 CH_cansat_37 7 16 0.0000000000000472817
Cicer arietinum L. Ca_LG4_v3 4 CH_car_22 4 5 0.0000000216322
Corylus avellana 9 4 CH_cav_108 4 6 0.000000121257
Coffea canephora chr11 4 CH_ccan_374 2 2 0.000579211
Carpinus fangiana Cfa03 4 CH_cfa_167 4 8 0.00000475832
Carpinus fangiana Cfa02 4 CH_cfa_35 6 6 0.0000000000000910292
Carpinus fangiana Cfa03 4 CH_cfa_66 5 6 0.000000000480234
Carpinus fangiana Cfa03 4 CH_cfa_67 5 6 0.000000000480234
Carya illinoinensis Chr01 4 CH_cil_19 10 12 5.35087e-24
Carya illinoinensis Chr11 4 CH_cil_324 3 3 0.0000569383
Carya illinoinensis Chr04 4 CH_cil_325 3 3 0.0000569383
Citrullus lanatus CG_Chr06 4 CH_cla_4 7 7 2.97736e-18
Cucumis melo chr05 4 CH_cme_19 7 12 9.35828e-16
Chenopodium quinoa C_Quinoa_Scaffold_3216 4 CH_cqu_306 3 3 0.0000220415
Cucumis sativus L. chr2 4 CH_csa_24 7 11 0.00000000000000102082
Davidia involucrata GWHABJS00000014 4 CH_din_185 3 3 0.00000577803
Erigeron canadensis Conyza_canadensis_scaffold:4 4 CH_eca_34 6 21 0.00000000000600325
Eucalyptus grandis Chr09 4 CH_egr_209 6 7 0.000000000000175484
Eucalyptus grandis Chr08 4 CH_egr_650 3 3 0.0000336305
Eucalyptus grandis Chr08 4 CH_egr_86 9 12 3.0276e-21
Erythranthe guttata scaffold_5 4 CH_egut_207 3 3 0.00000445382
Fragaria x ananassa Fvb4-1 4 CH_fan_113 4 4 0.0000000136984
Fragaria x ananassa Fvb4-4 4 CH_fan_64 5 7 0.000000000164855
Fragaria x ananassa Fvb4-2 4 CH_fan_90 5 10 0.00000000197542
Fragaria vesca Fvb4 4 CH_fve_102 4 4 0.00000000651779
Fragaria vesca Fvb4 4 CH_fve_175 4 11 0.00000214334
Gossypium hirsutum A03 4 CH_ghi_123 6 15 0.0000000000551772
Gossypium hirsutum D03 4 CH_ghi_191 5 12 0.0000000125916
Gossypium hirsutum D04 4 CH_ghi_394 3 3 0.0000312928
Glycine max Gm20 4 CH_gma_193 4 6 0.000000777006
Glycine max Gm10 4 CH_gma_41 6 6 0.0000000000000457854
Gossypium raimondii Chr12 4 CH_gra_189 3 3 0.0000175038
Gossypium raimondii Chr03 4 CH_gra_97 5 12 0.0000000069649
Helianthus annuus HanXRQChr07 4 CH_han_388 3 3 0.0000100686
Helianthus annuus HanXRQChr17 4 CH_han_467 3 4 0.0000402572
Lupinus albus Lalb_Chr02 4 CH_lal_214 3 3 0.0000295004
Lotus japonicus chr5 4 CH_lja_56 5 7 0.000000000332063
Malus domestica Chr13 4 CH_mdo_144 4 4 0.00000000514776
Malus domestica Chr16 4 CH_mdo_410 3 4 0.0000387678
Manihot esculenta Chromosome17 4 CH_mes_250 3 3 0.0000163602
Medicago truncatula chr1 4 CH_mtr_57 8 23 1.30285e-16
Nelumbo nucifera chr8 4 CH_nnu_175 4 22 0.0000426852
Punica granatum NC_045128.1 4 CH_pgr_129 4 6 0.0000000736248
Prunus persica Pp01 4 CH_ppe_27 9 14 1.87496e-20
Prunus persica Pp01 4 CH_ppe_285 3 3 0.0000273455
Pisum sativum chr6LG2 4 CH_psa_158 3 3 0.00000628574
Pisum sativum chr6LG2 4 CH_psa_62 4 4 0.00000000311508
Papaver somniferum NW_020643262.1 4 CH_pso_321 3 3 0.00000154101
Populus trichocarpa Chr10 4 CH_ptr_163 4 4 0.0000000158772
Populus trichocarpa Chr01 4 CH_ptr_98 5 5 0.0000000000119312
Quercus lobata CM012294 4 CH_qlo_317 5 7 0.00000000236667
Quercus lobata 3 4 CH_qlo_360 6 23 0.00000001302
Quercus lobata 6 4 CH_qlo_51 10 12 1.25114e-23
Quercus lobata CM012294 4 CH_qlo_605 4 8 0.00000663024
Quercus lobata 3 4 CH_qlo_761 3 3 0.000078369
Quercus lobata 5 4 CH_qlo_89 8 9 1.48759e-18
Rosa chinensis RcHm_v2.0_Chr4 4 CH_rch_273 4 7 0.0000000993475
Rosa chinensis RcHm_v2.0_Chr4 4 CH_rch_93 7 22 0.0000000000000352849
Rhododendron simsii chr05 4 CH_rsi_211 4 6 0.000000128365
Rhododendron simsii chr08 4 CH_rsi_382 3 5 0.000126293
Striga asiatica scaffold87 4 CH_sas_65 3 6 0.0000796987
Salvia bowleyana GWHASIU00000002 4 CH_sbo_252 3 3 0.00000478196
Salvia bowleyana GWHASIU00000004 4 CH_sbo_253 3 3 0.00000478196
Salix brachista GWHAAZH00000010 4 CH_sbr_203 3 3 0.0000154864
Salix brachista GWHAAZH00000016 4 CH_sbr_42 6 9 0.000000000000431717
Simmondsia chinensis GWHAASQ00000010 4 CH_sci_118 3 3 0.0000144629
Sechium edule LG09 4 CH_sed_19 8 10 1.05101e-18
Solanum lycopersicum SL4.0ch05 4 CH_sly_256 3 3 0.00000500744
Solanum pennellii Spenn-ch05 4 CH_spe_240 3 4 0.0000157828
Solanum tuberosum ST4.03ch05 4 CH_stu_274 3 3 0.00000267867
Selenicereus undatus Scaffold_33676 4 CH_sun_34 4 5 0.0000000136928
Trochodendron aralioides group8 4 CH_tar_120 4 6 0.0000000861522
Tripterygium wilfordii NC_052237.1 4 CH_twi_175 3 3 0.0000152943
Vigna mungo CM024071.1 4 CH_vmu_31 6 12 0.0000000000138496
Vitis vinifera chr1 4 CH_vvi_218 3 3 0.00000989371
Vitis vinifera chr14 4 CH_vvi_56 6 7 0.0000000000000155411

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001