Functional clusters
Information
- Type Gene Ontology
- Description phloem development
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr11 | 3 | CH_acertr_228 | 3 | 3 | 0.0000072239 |
| Acer truncatum | chr1 | 3 | CH_acertr_405 | 3 | 7 | 0.000252373 |
| Actinidia chinensis | Lachesis_group11 | 3 | CH_ach_16 | 5 | 5 | 0.0000000000042964 |
| Avicennia marina | ScioBoG_102834_HRSCAF_103055 | 3 | CH_ama_7 | 5 | 5 | 0.0000000000139513 |
| Aquilegia oxysepala | CHR05 | 3 | CH_aox_27 | 5 | 9 | 0.000000000241542 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_125 | 7 | 18 | 0.00000000000069167 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 3 | CH_arhy_131 | 7 | 20 | 0.00000000000168245 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 3 | CH_arhy_491 | 4 | 17 | 0.0000926026 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 3 | CH_arhy_625 | 3 | 5 | 0.000459477 |
| Amborella trichopoda | AmTr_v1.0_scaffold00166 | 3 | CH_atr_72 | 4 | 5 | 0.00000000537573 |
| Camellia sinensis var. sinensis | Chr10 | 3 | CH_camsi_437 | 3 | 3 | 0.0000128055 |
| Camellia sinensis var. sinensis | Chr1 | 3 | CH_camsi_87 | 6 | 11 | 0.00000000000124851 |
| Cannabis sativa | NC_044373.1 | 3 | CH_cansat_33 | 6 | 6 | 0.00000000000000632601 |
| Cannabis sativa | NC_044376.1 | 3 | CH_cansat_37 | 7 | 16 | 0.0000000000000472817 |
| Cicer arietinum L. | Ca_LG4_v3 | 3 | CH_car_22 | 4 | 5 | 0.0000000216322 |
| Corylus avellana | 9 | 3 | CH_cav_108 | 4 | 6 | 0.000000121257 |
| Coffea canephora | chr11 | 3 | CH_ccan_374 | 2 | 2 | 0.000579211 |
| Carpinus fangiana | Cfa03 | 3 | CH_cfa_167 | 4 | 8 | 0.00000475832 |
| Carpinus fangiana | Cfa02 | 3 | CH_cfa_35 | 6 | 6 | 0.0000000000000910292 |
| Carpinus fangiana | Cfa03 | 3 | CH_cfa_66 | 5 | 6 | 0.000000000480234 |
| Carpinus fangiana | Cfa03 | 3 | CH_cfa_67 | 5 | 6 | 0.000000000480234 |
| Carya illinoinensis | Chr01 | 3 | CH_cil_19 | 10 | 12 | 5.35087e-24 |
| Carya illinoinensis | Chr11 | 3 | CH_cil_324 | 3 | 3 | 0.0000569383 |
| Carya illinoinensis | Chr04 | 3 | CH_cil_325 | 3 | 3 | 0.0000569383 |
| Citrullus lanatus | CG_Chr06 | 3 | CH_cla_4 | 7 | 7 | 2.97736e-18 |
| Cucumis melo | chr05 | 3 | CH_cme_19 | 7 | 12 | 9.35828e-16 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3216 | 3 | CH_cqu_306 | 3 | 3 | 0.0000220415 |
| Cucumis sativus L. | chr2 | 3 | CH_csa_24 | 7 | 11 | 0.00000000000000102082 |
| Davidia involucrata | GWHABJS00000014 | 3 | CH_din_185 | 3 | 3 | 0.00000577803 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 3 | CH_eca_34 | 6 | 21 | 0.00000000000600325 |
| Eucalyptus grandis | Chr09 | 3 | CH_egr_209 | 6 | 7 | 0.000000000000175484 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_650 | 3 | 3 | 0.0000336305 |
| Eucalyptus grandis | Chr08 | 3 | CH_egr_86 | 9 | 12 | 3.0276e-21 |
| Erythranthe guttata | scaffold_5 | 3 | CH_egut_207 | 3 | 3 | 0.00000445382 |
| Fragaria x ananassa | Fvb4-1 | 3 | CH_fan_113 | 4 | 4 | 0.0000000136984 |
| Fragaria x ananassa | Fvb4-4 | 3 | CH_fan_64 | 5 | 7 | 0.000000000164855 |
| Fragaria x ananassa | Fvb4-2 | 3 | CH_fan_90 | 5 | 10 | 0.00000000197542 |
| Fragaria vesca | Fvb4 | 3 | CH_fve_102 | 4 | 4 | 0.00000000651779 |
| Fragaria vesca | Fvb4 | 3 | CH_fve_175 | 4 | 11 | 0.00000214334 |
| Gossypium hirsutum | A03 | 3 | CH_ghi_123 | 6 | 15 | 0.0000000000551772 |
| Gossypium hirsutum | D03 | 3 | CH_ghi_191 | 5 | 12 | 0.0000000125916 |
| Gossypium hirsutum | D04 | 3 | CH_ghi_394 | 3 | 3 | 0.0000312928 |
| Glycine max | Gm20 | 3 | CH_gma_193 | 4 | 6 | 0.000000777006 |
| Glycine max | Gm10 | 3 | CH_gma_41 | 6 | 6 | 0.0000000000000457854 |
| Gossypium raimondii | Chr12 | 3 | CH_gra_189 | 3 | 3 | 0.0000175038 |
| Gossypium raimondii | Chr03 | 3 | CH_gra_97 | 5 | 12 | 0.0000000069649 |
| Helianthus annuus | HanXRQChr07 | 3 | CH_han_388 | 3 | 3 | 0.0000100686 |
| Helianthus annuus | HanXRQChr17 | 3 | CH_han_467 | 3 | 4 | 0.0000402572 |
| Lupinus albus | Lalb_Chr02 | 3 | CH_lal_214 | 3 | 3 | 0.0000295004 |
| Lotus japonicus | chr5 | 3 | CH_lja_56 | 5 | 7 | 0.000000000332063 |
| Malus domestica | Chr13 | 3 | CH_mdo_144 | 4 | 4 | 0.00000000514776 |
| Malus domestica | Chr16 | 3 | CH_mdo_410 | 3 | 4 | 0.0000387678 |
| Manihot esculenta | Chromosome17 | 3 | CH_mes_250 | 3 | 3 | 0.0000163602 |
| Medicago truncatula | chr1 | 3 | CH_mtr_57 | 8 | 23 | 1.30285e-16 |
| Nelumbo nucifera | chr8 | 3 | CH_nnu_175 | 4 | 22 | 0.0000426852 |
| Punica granatum | NC_045128.1 | 3 | CH_pgr_129 | 4 | 6 | 0.0000000736248 |
| Prunus persica | Pp01 | 3 | CH_ppe_27 | 9 | 14 | 1.87496e-20 |
| Prunus persica | Pp01 | 3 | CH_ppe_285 | 3 | 3 | 0.0000273455 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_158 | 3 | 3 | 0.00000628574 |
| Pisum sativum | chr6LG2 | 3 | CH_psa_62 | 4 | 4 | 0.00000000311508 |
| Papaver somniferum | NW_020643262.1 | 3 | CH_pso_321 | 3 | 3 | 0.00000154101 |
| Populus trichocarpa | Chr10 | 3 | CH_ptr_163 | 4 | 4 | 0.0000000158772 |
| Populus trichocarpa | Chr01 | 3 | CH_ptr_98 | 5 | 5 | 0.0000000000119312 |
| Quercus lobata | CM012294 | 3 | CH_qlo_317 | 5 | 7 | 0.00000000236667 |
| Quercus lobata | 3 | 3 | CH_qlo_360 | 6 | 23 | 0.00000001302 |
| Quercus lobata | 6 | 3 | CH_qlo_51 | 10 | 12 | 1.25114e-23 |
| Quercus lobata | CM012294 | 3 | CH_qlo_605 | 4 | 8 | 0.00000663024 |
| Quercus lobata | 3 | 3 | CH_qlo_761 | 3 | 3 | 0.000078369 |
| Quercus lobata | 5 | 3 | CH_qlo_89 | 8 | 9 | 1.48759e-18 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_273 | 4 | 7 | 0.0000000993475 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_93 | 7 | 22 | 0.0000000000000352849 |
| Rhododendron simsii | chr05 | 3 | CH_rsi_211 | 4 | 6 | 0.000000128365 |
| Rhododendron simsii | chr08 | 3 | CH_rsi_382 | 3 | 5 | 0.000126293 |
| Striga asiatica | scaffold87 | 3 | CH_sas_65 | 3 | 6 | 0.0000796987 |
| Salvia bowleyana | GWHASIU00000002 | 3 | CH_sbo_252 | 3 | 3 | 0.00000478196 |
| Salvia bowleyana | GWHASIU00000004 | 3 | CH_sbo_253 | 3 | 3 | 0.00000478196 |
| Salix brachista | GWHAAZH00000010 | 3 | CH_sbr_203 | 3 | 3 | 0.0000154864 |
| Salix brachista | GWHAAZH00000016 | 3 | CH_sbr_42 | 6 | 9 | 0.000000000000431717 |
| Simmondsia chinensis | GWHAASQ00000010 | 3 | CH_sci_118 | 3 | 3 | 0.0000144629 |
| Sechium edule | LG09 | 3 | CH_sed_19 | 8 | 10 | 1.05101e-18 |
| Solanum lycopersicum | SL4.0ch05 | 3 | CH_sly_256 | 3 | 3 | 0.00000500744 |
| Solanum pennellii | Spenn-ch05 | 3 | CH_spe_240 | 3 | 4 | 0.0000157828 |
| Solanum tuberosum | ST4.03ch05 | 3 | CH_stu_274 | 3 | 3 | 0.00000267867 |
| Selenicereus undatus | Scaffold_33676 | 3 | CH_sun_34 | 4 | 5 | 0.0000000136928 |
| Trochodendron aralioides | group8 | 3 | CH_tar_120 | 4 | 6 | 0.0000000861522 |
| Tripterygium wilfordii | NC_052237.1 | 3 | CH_twi_175 | 3 | 3 | 0.0000152943 |
| Vigna mungo | CM024071.1 | 3 | CH_vmu_31 | 6 | 12 | 0.0000000000138496 |
| Vitis vinifera | chr1 | 3 | CH_vvi_218 | 3 | 3 | 0.00000989371 |
| Vitis vinifera | chr14 | 3 | CH_vvi_56 | 6 | 7 | 0.0000000000000155411 |
| Acer truncatum | chr11 | 4 | CH_acertr_228 | 3 | 3 | 0.0000072239 |
| Acer truncatum | chr1 | 4 | CH_acertr_405 | 3 | 7 | 0.000252373 |
| Actinidia chinensis | Lachesis_group11 | 4 | CH_ach_16 | 5 | 5 | 0.0000000000042964 |
| Avicennia marina | ScioBoG_102834_HRSCAF_103055 | 4 | CH_ama_7 | 5 | 5 | 0.0000000000139513 |
| Aquilegia oxysepala | CHR05 | 4 | CH_aox_27 | 5 | 9 | 0.000000000241542 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_125 | 7 | 18 | 0.00000000000069167 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 4 | CH_arhy_131 | 7 | 20 | 0.00000000000168245 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 4 | CH_arhy_491 | 4 | 17 | 0.0000926026 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 4 | CH_arhy_625 | 3 | 5 | 0.000459477 |
| Amborella trichopoda | AmTr_v1.0_scaffold00166 | 4 | CH_atr_72 | 4 | 5 | 0.00000000537573 |
| Camellia sinensis var. sinensis | Chr10 | 4 | CH_camsi_437 | 3 | 3 | 0.0000128055 |
| Camellia sinensis var. sinensis | Chr1 | 4 | CH_camsi_87 | 6 | 11 | 0.00000000000124851 |
| Cannabis sativa | NC_044373.1 | 4 | CH_cansat_33 | 6 | 6 | 0.00000000000000632601 |
| Cannabis sativa | NC_044376.1 | 4 | CH_cansat_37 | 7 | 16 | 0.0000000000000472817 |
| Cicer arietinum L. | Ca_LG4_v3 | 4 | CH_car_22 | 4 | 5 | 0.0000000216322 |
| Corylus avellana | 9 | 4 | CH_cav_108 | 4 | 6 | 0.000000121257 |
| Coffea canephora | chr11 | 4 | CH_ccan_374 | 2 | 2 | 0.000579211 |
| Carpinus fangiana | Cfa03 | 4 | CH_cfa_167 | 4 | 8 | 0.00000475832 |
| Carpinus fangiana | Cfa02 | 4 | CH_cfa_35 | 6 | 6 | 0.0000000000000910292 |
| Carpinus fangiana | Cfa03 | 4 | CH_cfa_66 | 5 | 6 | 0.000000000480234 |
| Carpinus fangiana | Cfa03 | 4 | CH_cfa_67 | 5 | 6 | 0.000000000480234 |
| Carya illinoinensis | Chr01 | 4 | CH_cil_19 | 10 | 12 | 5.35087e-24 |
| Carya illinoinensis | Chr11 | 4 | CH_cil_324 | 3 | 3 | 0.0000569383 |
| Carya illinoinensis | Chr04 | 4 | CH_cil_325 | 3 | 3 | 0.0000569383 |
| Citrullus lanatus | CG_Chr06 | 4 | CH_cla_4 | 7 | 7 | 2.97736e-18 |
| Cucumis melo | chr05 | 4 | CH_cme_19 | 7 | 12 | 9.35828e-16 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3216 | 4 | CH_cqu_306 | 3 | 3 | 0.0000220415 |
| Cucumis sativus L. | chr2 | 4 | CH_csa_24 | 7 | 11 | 0.00000000000000102082 |
| Davidia involucrata | GWHABJS00000014 | 4 | CH_din_185 | 3 | 3 | 0.00000577803 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 4 | CH_eca_34 | 6 | 21 | 0.00000000000600325 |
| Eucalyptus grandis | Chr09 | 4 | CH_egr_209 | 6 | 7 | 0.000000000000175484 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_650 | 3 | 3 | 0.0000336305 |
| Eucalyptus grandis | Chr08 | 4 | CH_egr_86 | 9 | 12 | 3.0276e-21 |
| Erythranthe guttata | scaffold_5 | 4 | CH_egut_207 | 3 | 3 | 0.00000445382 |
| Fragaria x ananassa | Fvb4-1 | 4 | CH_fan_113 | 4 | 4 | 0.0000000136984 |
| Fragaria x ananassa | Fvb4-4 | 4 | CH_fan_64 | 5 | 7 | 0.000000000164855 |
| Fragaria x ananassa | Fvb4-2 | 4 | CH_fan_90 | 5 | 10 | 0.00000000197542 |
| Fragaria vesca | Fvb4 | 4 | CH_fve_102 | 4 | 4 | 0.00000000651779 |
| Fragaria vesca | Fvb4 | 4 | CH_fve_175 | 4 | 11 | 0.00000214334 |
| Gossypium hirsutum | A03 | 4 | CH_ghi_123 | 6 | 15 | 0.0000000000551772 |
| Gossypium hirsutum | D03 | 4 | CH_ghi_191 | 5 | 12 | 0.0000000125916 |
| Gossypium hirsutum | D04 | 4 | CH_ghi_394 | 3 | 3 | 0.0000312928 |
| Glycine max | Gm20 | 4 | CH_gma_193 | 4 | 6 | 0.000000777006 |
| Glycine max | Gm10 | 4 | CH_gma_41 | 6 | 6 | 0.0000000000000457854 |
| Gossypium raimondii | Chr12 | 4 | CH_gra_189 | 3 | 3 | 0.0000175038 |
| Gossypium raimondii | Chr03 | 4 | CH_gra_97 | 5 | 12 | 0.0000000069649 |
| Helianthus annuus | HanXRQChr07 | 4 | CH_han_388 | 3 | 3 | 0.0000100686 |
| Helianthus annuus | HanXRQChr17 | 4 | CH_han_467 | 3 | 4 | 0.0000402572 |
| Lupinus albus | Lalb_Chr02 | 4 | CH_lal_214 | 3 | 3 | 0.0000295004 |
| Lotus japonicus | chr5 | 4 | CH_lja_56 | 5 | 7 | 0.000000000332063 |
| Malus domestica | Chr13 | 4 | CH_mdo_144 | 4 | 4 | 0.00000000514776 |
| Malus domestica | Chr16 | 4 | CH_mdo_410 | 3 | 4 | 0.0000387678 |
| Manihot esculenta | Chromosome17 | 4 | CH_mes_250 | 3 | 3 | 0.0000163602 |
| Medicago truncatula | chr1 | 4 | CH_mtr_57 | 8 | 23 | 1.30285e-16 |
| Nelumbo nucifera | chr8 | 4 | CH_nnu_175 | 4 | 22 | 0.0000426852 |
| Punica granatum | NC_045128.1 | 4 | CH_pgr_129 | 4 | 6 | 0.0000000736248 |
| Prunus persica | Pp01 | 4 | CH_ppe_27 | 9 | 14 | 1.87496e-20 |
| Prunus persica | Pp01 | 4 | CH_ppe_285 | 3 | 3 | 0.0000273455 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_158 | 3 | 3 | 0.00000628574 |
| Pisum sativum | chr6LG2 | 4 | CH_psa_62 | 4 | 4 | 0.00000000311508 |
| Papaver somniferum | NW_020643262.1 | 4 | CH_pso_321 | 3 | 3 | 0.00000154101 |
| Populus trichocarpa | Chr10 | 4 | CH_ptr_163 | 4 | 4 | 0.0000000158772 |
| Populus trichocarpa | Chr01 | 4 | CH_ptr_98 | 5 | 5 | 0.0000000000119312 |
| Quercus lobata | CM012294 | 4 | CH_qlo_317 | 5 | 7 | 0.00000000236667 |
| Quercus lobata | 3 | 4 | CH_qlo_360 | 6 | 23 | 0.00000001302 |
| Quercus lobata | 6 | 4 | CH_qlo_51 | 10 | 12 | 1.25114e-23 |
| Quercus lobata | CM012294 | 4 | CH_qlo_605 | 4 | 8 | 0.00000663024 |
| Quercus lobata | 3 | 4 | CH_qlo_761 | 3 | 3 | 0.000078369 |
| Quercus lobata | 5 | 4 | CH_qlo_89 | 8 | 9 | 1.48759e-18 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_273 | 4 | 7 | 0.0000000993475 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_93 | 7 | 22 | 0.0000000000000352849 |
| Rhododendron simsii | chr05 | 4 | CH_rsi_211 | 4 | 6 | 0.000000128365 |
| Rhododendron simsii | chr08 | 4 | CH_rsi_382 | 3 | 5 | 0.000126293 |
| Striga asiatica | scaffold87 | 4 | CH_sas_65 | 3 | 6 | 0.0000796987 |
| Salvia bowleyana | GWHASIU00000002 | 4 | CH_sbo_252 | 3 | 3 | 0.00000478196 |
| Salvia bowleyana | GWHASIU00000004 | 4 | CH_sbo_253 | 3 | 3 | 0.00000478196 |
| Salix brachista | GWHAAZH00000010 | 4 | CH_sbr_203 | 3 | 3 | 0.0000154864 |
| Salix brachista | GWHAAZH00000016 | 4 | CH_sbr_42 | 6 | 9 | 0.000000000000431717 |
| Simmondsia chinensis | GWHAASQ00000010 | 4 | CH_sci_118 | 3 | 3 | 0.0000144629 |
| Sechium edule | LG09 | 4 | CH_sed_19 | 8 | 10 | 1.05101e-18 |
| Solanum lycopersicum | SL4.0ch05 | 4 | CH_sly_256 | 3 | 3 | 0.00000500744 |
| Solanum pennellii | Spenn-ch05 | 4 | CH_spe_240 | 3 | 4 | 0.0000157828 |
| Solanum tuberosum | ST4.03ch05 | 4 | CH_stu_274 | 3 | 3 | 0.00000267867 |
| Selenicereus undatus | Scaffold_33676 | 4 | CH_sun_34 | 4 | 5 | 0.0000000136928 |
| Trochodendron aralioides | group8 | 4 | CH_tar_120 | 4 | 6 | 0.0000000861522 |
| Tripterygium wilfordii | NC_052237.1 | 4 | CH_twi_175 | 3 | 3 | 0.0000152943 |
| Vigna mungo | CM024071.1 | 4 | CH_vmu_31 | 6 | 12 | 0.0000000000138496 |
| Vitis vinifera | chr1 | 4 | CH_vvi_218 | 3 | 3 | 0.00000989371 |
| Vitis vinifera | chr14 | 4 | CH_vvi_56 | 6 | 7 | 0.0000000000000155411 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |