Functional clusters
Information
- Type Gene Ontology
- Description plasmodesma
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 3 | CH_aly_351 | 8 | 19 | 0.000971149 |
| Aquilegia oxysepala | CHR01 | 3 | CH_aox_283 | 7 | 11 | 0.000556081 |
| Arabidopsis thaliana | Chr4 | 3 | CH_ath_609 | 10 | 56 | 0.000893032 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 3 | CH_bvu_168 | 9 | 19 | 0.0000621641 |
| Camellia sinensis var. sinensis | Chr4 | 3 | CH_camsi_404 | 16 | 72 | 0.00000642235 |
| Capsicum annuum | PGAv.1.6.scaffold1001 | 3 | CH_can_478 | 6 | 9 | 0.000916673 |
| Corylus avellana | 1 | 3 | CH_cav_199 | 15 | 60 | 0.0000190543 |
| Corylus avellana | 1 | 3 | CH_cav_218 | 6 | 6 | 0.0000336224 |
| Citrus clementina | scaffold_4 | 3 | CH_ccl_404 | 7 | 11 | 0.00050635 |
| Capsella rubella | scaffold_5 | 3 | CH_cru_348 | 5 | 5 | 0.000986447 |
| Eutrema salsugineum | scaffold_3 | 3 | CH_esa_208 | 9 | 20 | 0.000229021 |
| Lonicera japonica | GWHAAZE00000104 | 3 | CH_lonja_470 | 11 | 38 | 0.000232195 |
| Medicago truncatula | chr4 | 3 | CH_mtr_451 | 12 | 49 | 0.0000219017 |
| Medicago truncatula | chr2 | 3 | CH_mtr_522 | 7 | 12 | 0.0000777128 |
| Petunia axillaris | Peaxi162Scf00476 | 3 | CH_pax_315 | 5 | 5 | 0.000574809 |
| Physcomitrium patens | Chr15 | 3 | CH_ppa_156 | 18 | 77 | 0.000249215 |
| Prunus persica | Pp01 | 3 | CH_ppe_166 | 16 | 46 | 0.0000000106145 |
| Quercus lobata | 1 | 3 | CH_qlo_993 | 5 | 5 | 0.000655609 |
| Rhododendron simsii | chr01 | 3 | CH_rsi_367 | 7 | 10 | 0.0000752719 |
| Salvia bowleyana | GWHASIU00000006 | 3 | CH_sbo_84 | 20 | 70 | 0.00000000000342277 |
| Sechium edule | LG03 | 3 | CH_sed_151 | 7 | 8 | 0.0000343159 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_1196 | 14 | 70 | 0.000285068 |
| Sequoiadendron giganteum | chr5 | 3 | CH_sgi_616 | 8 | 9 | 0.00000012611 |
| Solanum lycopersicum | SL4.0ch06 | 3 | CH_sly_456 | 6 | 7 | 0.000194947 |
| Schrenkiella parvula | ch6-1 | 3 | CH_spa_198 | 8 | 17 | 0.000649011 |
| Solanum pennellii | Spenn-ch01 | 3 | CH_spe_265 | 11 | 41 | 0.0000320873 |
| Solanum pennellii | Spenn-ch06 | 3 | CH_spe_325 | 6 | 8 | 0.000114592 |
| Solanum tuberosum | ST4.03ch10 | 3 | CH_stu_416 | 13 | 58 | 0.0000983976 |
| Selenicereus undatus | Scaffold_33678 | 3 | CH_sun_245 | 10 | 33 | 0.000845619 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_358 | 6 | 7 | 0.000619697 |
| Arabidopsis lyrata | scaffold_6 | 4 | CH_aly_351 | 8 | 19 | 0.000971149 |
| Aquilegia oxysepala | CHR01 | 4 | CH_aox_283 | 7 | 11 | 0.000556081 |
| Arabidopsis thaliana | Chr4 | 4 | CH_ath_609 | 10 | 56 | 0.000893032 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 4 | CH_bvu_168 | 9 | 19 | 0.0000621641 |
| Camellia sinensis var. sinensis | Chr4 | 4 | CH_camsi_404 | 16 | 72 | 0.00000642235 |
| Capsicum annuum | PGAv.1.6.scaffold1001 | 4 | CH_can_478 | 6 | 9 | 0.000916673 |
| Corylus avellana | 1 | 4 | CH_cav_199 | 15 | 60 | 0.0000190543 |
| Corylus avellana | 1 | 4 | CH_cav_218 | 6 | 6 | 0.0000336224 |
| Citrus clementina | scaffold_4 | 4 | CH_ccl_404 | 7 | 11 | 0.00050635 |
| Capsella rubella | scaffold_5 | 4 | CH_cru_348 | 5 | 5 | 0.000986447 |
| Eutrema salsugineum | scaffold_3 | 4 | CH_esa_208 | 9 | 20 | 0.000229021 |
| Lonicera japonica | GWHAAZE00000104 | 4 | CH_lonja_470 | 11 | 38 | 0.000232195 |
| Medicago truncatula | chr4 | 4 | CH_mtr_451 | 12 | 49 | 0.0000219017 |
| Medicago truncatula | chr2 | 4 | CH_mtr_522 | 7 | 12 | 0.0000777128 |
| Petunia axillaris | Peaxi162Scf00476 | 4 | CH_pax_315 | 5 | 5 | 0.000574809 |
| Physcomitrium patens | Chr15 | 4 | CH_ppa_156 | 18 | 77 | 0.000249215 |
| Prunus persica | Pp01 | 4 | CH_ppe_166 | 16 | 46 | 0.0000000106145 |
| Quercus lobata | 1 | 4 | CH_qlo_993 | 5 | 5 | 0.000655609 |
| Rhododendron simsii | chr01 | 4 | CH_rsi_367 | 7 | 10 | 0.0000752719 |
| Salvia bowleyana | GWHASIU00000006 | 4 | CH_sbo_84 | 20 | 70 | 0.00000000000342277 |
| Sechium edule | LG03 | 4 | CH_sed_151 | 7 | 8 | 0.0000343159 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_1196 | 14 | 70 | 0.000285068 |
| Sequoiadendron giganteum | chr5 | 4 | CH_sgi_616 | 8 | 9 | 0.00000012611 |
| Solanum lycopersicum | SL4.0ch06 | 4 | CH_sly_456 | 6 | 7 | 0.000194947 |
| Schrenkiella parvula | ch6-1 | 4 | CH_spa_198 | 8 | 17 | 0.000649011 |
| Solanum pennellii | Spenn-ch01 | 4 | CH_spe_265 | 11 | 41 | 0.0000320873 |
| Solanum pennellii | Spenn-ch06 | 4 | CH_spe_325 | 6 | 8 | 0.000114592 |
| Solanum tuberosum | ST4.03ch10 | 4 | CH_stu_416 | 13 | 58 | 0.0000983976 |
| Selenicereus undatus | Scaffold_33678 | 4 | CH_sun_245 | 10 | 33 | 0.000845619 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_358 | 6 | 7 | 0.000619697 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009511 | plasmodesmatal endoplasmic reticulum | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |