Functional clusters
Information
- Type Gene Ontology
- Description structural constituent of cell wall
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica napus | C03 | 3 | CH_bna_262 | 3 | 3 | 0.00000209824 |
| Brassica oleracea | C3 | 3 | CH_bol_165 | 3 | 3 | 0.00000108977 |
| Capsicum annuum | PGAv.1.6.scaffold484 | 3 | CH_can_414 | 2 | 4 | 0.000495622 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_85 | 4 | 5 | 0.0000000106677 |
| Daucus carota | DCARv2_Chr4 | 3 | CH_dca_391 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000011 | 3 | CH_din_418 | 2 | 2 | 0.000750188 |
| Durio zibethinus | NW_019167871.1 | 3 | CH_dzi_57 | 4 | 4 | 0.0000000000627319 |
| Fragaria x ananassa | Fvb4-3 | 3 | CH_fan_310 | 3 | 11 | 0.0000242206 |
| Fragaria vesca | Fvb4 | 3 | CH_fve_188 | 3 | 9 | 0.00000437091 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 3 | CH_lsa_193 | 3 | 3 | 0.00000013871 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 3 | CH_lsa_270 | 3 | 8 | 0.00000776377 |
| Marchantia polymorpha | scaffold_62 | 3 | CH_mpo_10 | 5 | 5 | 0.000000000000062508 |
| Medicago truncatula | chr1 | 3 | CH_mtr_419 | 3 | 5 | 0.00000921364 |
| Medicago truncatula | chr6 | 3 | CH_mtr_463 | 3 | 7 | 0.0000322355 |
| Medicago truncatula | chr4 | 3 | CH_mtr_68 | 6 | 12 | 0.00000000000000730407 |
| Nelumbo nucifera | chr7 | 3 | CH_nnu_317 | 2 | 2 | 0.000722526 |
| Nicotiana tabacum | Nitab4.5_0000032 | 3 | CH_nta_14 | 4 | 7 | 0.00000000208023 |
| Petunia axillaris | Peaxi162Scf00263 | 3 | CH_pax_86 | 3 | 3 | 0.00000025988 |
| Pisum sativum | chr1LG6 | 3 | CH_psa_164 | 4 | 41 | 0.00000900582 |
| Papaver somniferum | NW_020620714.1 | 3 | CH_pso_40 | 7 | 21 | 1.36817e-17 |
| Papaver somniferum | NW_020620714.1 | 3 | CH_pso_412 | 3 | 8 | 0.000023862 |
| Phaseolus vulgaris | Chr09 | 3 | CH_pvu_149 | 3 | 4 | 0.0000011335 |
| Sechium edule | LG07 | 3 | CH_sed_96 | 3 | 4 | 0.000000305364 |
| Solanum lycopersicum | SL4.0ch04 | 3 | CH_sly_253 | 3 | 5 | 0.00000433942 |
| Solanum lycopersicum | SL4.0ch12 | 3 | CH_sly_275 | 3 | 6 | 0.00000867743 |
| Solanum pennellii | Spenn-ch04 | 3 | CH_spe_406 | 2 | 3 | 0.000400297 |
| Solanum tuberosum | ST4.03ch04 | 3 | CH_stu_43 | 6 | 9 | 5.6105e-17 |
| Theobroma cacao | Chromosome_9 | 3 | CH_tca_109 | 4 | 12 | 0.00000000291565 |
| Vigna mungo | CM024072.1 | 3 | CH_vmu_315 | 2 | 2 | 0.000646141 |
| Brassica napus | C03 | 4 | CH_bna_262 | 3 | 3 | 0.00000209824 |
| Brassica oleracea | C3 | 4 | CH_bol_165 | 3 | 3 | 0.00000108977 |
| Capsicum annuum | PGAv.1.6.scaffold484 | 4 | CH_can_414 | 2 | 4 | 0.000495622 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_85 | 4 | 5 | 0.0000000106677 |
| Daucus carota | DCARv2_Chr4 | 4 | CH_dca_391 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000011 | 4 | CH_din_418 | 2 | 2 | 0.000750188 |
| Durio zibethinus | NW_019167871.1 | 4 | CH_dzi_57 | 4 | 4 | 0.0000000000627319 |
| Fragaria x ananassa | Fvb4-3 | 4 | CH_fan_310 | 3 | 11 | 0.0000242206 |
| Fragaria vesca | Fvb4 | 4 | CH_fve_188 | 3 | 9 | 0.00000437091 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 4 | CH_lsa_193 | 3 | 3 | 0.00000013871 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 4 | CH_lsa_270 | 3 | 8 | 0.00000776377 |
| Marchantia polymorpha | scaffold_62 | 4 | CH_mpo_10 | 5 | 5 | 0.000000000000062508 |
| Medicago truncatula | chr1 | 4 | CH_mtr_419 | 3 | 5 | 0.00000921364 |
| Medicago truncatula | chr6 | 4 | CH_mtr_463 | 3 | 7 | 0.0000322355 |
| Medicago truncatula | chr4 | 4 | CH_mtr_68 | 6 | 12 | 0.00000000000000730407 |
| Nelumbo nucifera | chr7 | 4 | CH_nnu_317 | 2 | 2 | 0.000722526 |
| Nicotiana tabacum | Nitab4.5_0000032 | 4 | CH_nta_14 | 4 | 7 | 0.00000000208023 |
| Petunia axillaris | Peaxi162Scf00263 | 4 | CH_pax_86 | 3 | 3 | 0.00000025988 |
| Pisum sativum | chr1LG6 | 4 | CH_psa_164 | 4 | 41 | 0.00000900582 |
| Papaver somniferum | NW_020620714.1 | 4 | CH_pso_40 | 7 | 21 | 1.36817e-17 |
| Papaver somniferum | NW_020620714.1 | 4 | CH_pso_412 | 3 | 8 | 0.000023862 |
| Phaseolus vulgaris | Chr09 | 4 | CH_pvu_149 | 3 | 4 | 0.0000011335 |
| Sechium edule | LG07 | 4 | CH_sed_96 | 3 | 4 | 0.000000305364 |
| Solanum lycopersicum | SL4.0ch04 | 4 | CH_sly_253 | 3 | 5 | 0.00000433942 |
| Solanum lycopersicum | SL4.0ch12 | 4 | CH_sly_275 | 3 | 6 | 0.00000867743 |
| Solanum pennellii | Spenn-ch04 | 4 | CH_spe_406 | 2 | 3 | 0.000400297 |
| Solanum tuberosum | ST4.03ch04 | 4 | CH_stu_43 | 6 | 9 | 5.6105e-17 |
| Theobroma cacao | Chromosome_9 | 4 | CH_tca_109 | 4 | 12 | 0.00000000291565 |
| Vigna mungo | CM024072.1 | 4 | CH_vmu_315 | 2 | 2 | 0.000646141 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |