Functional clusters
Information
- Type Gene Ontology
- Description alpha-amylase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 3 | CH_amhyb_31 | 4 | 7 | 0.00000000219117 |
| Aquilegia oxysepala | CHR06 | 3 | CH_aox_263 | 2 | 2 | 0.000481193 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 3 | CH_bvu_43 | 5 | 14 | 0.0000000000887668 |
| Carpinus fangiana | Cfa03 | 3 | CH_cfa_131 | 3 | 3 | 0.00000072273 |
| Durio zibethinus | NW_019167937.1 | 3 | CH_dzi_109 | 3 | 3 | 0.000000180454 |
| Eucalyptus grandis | Chr06 | 3 | CH_egr_811 | 2 | 2 | 0.000351165 |
| Helianthus annuus | HanXRQChr05 | 3 | CH_han_635 | 2 | 2 | 0.000386429 |
| Lupinus albus | Lalb_Chr14 | 3 | CH_lal_111 | 3 | 3 | 0.0000000826343 |
| Nicotiana tabacum | Nitab4.5_0000287 | 3 | CH_nta_112 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr09 | 3 | CH_osa_194 | 3 | 5 | 0.0000020079 |
| Petunia axillaris | Peaxi162Scf00252 | 3 | CH_pax_49 | 4 | 8 | 0.00000000255872 |
| Punica granatum | NC_045127.1 | 3 | CH_pgr_351 | 2 | 2 | 0.000450214 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_352 | 3 | 7 | 0.00000439551 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 3 | CH_rch_359 | 3 | 7 | 0.0000016683 |
| Rhododendron simsii | chr08 | 3 | CH_rsi_501 | 2 | 2 | 0.000645307 |
| Solanum lycopersicum | SL4.0ch05 | 3 | CH_sly_572 | 2 | 2 | 0.000880411 |
| Vitis vinifera | chr3 | 3 | CH_vvi_105 | 4 | 7 | 0.00000000161681 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 4 | CH_amhyb_31 | 4 | 7 | 0.00000000219117 |
| Aquilegia oxysepala | CHR06 | 4 | CH_aox_263 | 2 | 2 | 0.000481193 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 4 | CH_bvu_43 | 5 | 14 | 0.0000000000887668 |
| Carpinus fangiana | Cfa03 | 4 | CH_cfa_131 | 3 | 3 | 0.00000072273 |
| Durio zibethinus | NW_019167937.1 | 4 | CH_dzi_109 | 3 | 3 | 0.000000180454 |
| Eucalyptus grandis | Chr06 | 4 | CH_egr_811 | 2 | 2 | 0.000351165 |
| Helianthus annuus | HanXRQChr05 | 4 | CH_han_635 | 2 | 2 | 0.000386429 |
| Lupinus albus | Lalb_Chr14 | 4 | CH_lal_111 | 3 | 3 | 0.0000000826343 |
| Nicotiana tabacum | Nitab4.5_0000287 | 4 | CH_nta_112 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr09 | 4 | CH_osa_194 | 3 | 5 | 0.0000020079 |
| Petunia axillaris | Peaxi162Scf00252 | 4 | CH_pax_49 | 4 | 8 | 0.00000000255872 |
| Punica granatum | NC_045127.1 | 4 | CH_pgr_351 | 2 | 2 | 0.000450214 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_352 | 3 | 7 | 0.00000439551 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 4 | CH_rch_359 | 3 | 7 | 0.0000016683 |
| Rhododendron simsii | chr08 | 4 | CH_rsi_501 | 2 | 2 | 0.000645307 |
| Solanum lycopersicum | SL4.0ch05 | 4 | CH_sly_572 | 2 | 2 | 0.000880411 |
| Vitis vinifera | chr3 | 4 | CH_vvi_105 | 4 | 7 | 0.00000000161681 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |