Functional clusters
Information
- Type Gene Ontology
- Description squalene monooxygenase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 3 | CH_aar_265 | 2 | 2 | 0.000912326 |
| Acer truncatum | chr2 | 3 | CH_acertr_29 | 5 | 6 | 0.0000000000000622474 |
| Arabidopsis lyrata | scaffold_6 | 3 | CH_aly_19 | 5 | 5 | 0.0000000000000079731 |
| Arabidopsis thaliana | Chr5 | 3 | CH_ath_93 | 4 | 15 | 0.00000000176466 |
| Brassica carinata | ChrB07 | 3 | CH_bca_294 | 3 | 3 | 0.000000559315 |
| Brassica carinata | ChrC03 | 3 | CH_bca_398 | 3 | 5 | 0.00000559168 |
| Brassica napus | A02 | 3 | CH_bna_279 | 3 | 4 | 0.00000318308 |
| Brassica napus | C02 | 3 | CH_bna_398 | 3 | 7 | 0.0000278402 |
| Brassica oleracea | C2 | 3 | CH_bol_217 | 3 | 7 | 0.0000123338 |
| Citrus clementina | scaffold_1 | 3 | CH_ccl_110 | 4 | 6 | 0.0000000017384 |
| Cardamine hirsuta | Chr6 | 3 | CH_chi_8 | 9 | 9 | 5.28569e-28 |
| Carya illinoinensis | Chr08 | 3 | CH_cil_127 | 4 | 4 | 0.000000000050012 |
| Capsella rubella | scaffold_6 | 3 | CH_cru_52 | 4 | 4 | 0.0000000000410454 |
| Davidia involucrata | GWHABJS00000005 | 3 | CH_din_63 | 4 | 4 | 0.000000000123852 |
| Eucalyptus grandis | Chr06 | 3 | CH_egr_877 | 2 | 2 | 0.000877912 |
| Eutrema salsugineum | scaffold_6 | 3 | CH_esa_239 | 2 | 2 | 0.000456899 |
| Fragaria x ananassa | Fvb2-2 | 3 | CH_fan_105 | 4 | 5 | 0.00000000962123 |
| Fragaria x ananassa | Fvb2-3 | 3 | CH_fan_13 | 7 | 11 | 2.34263e-17 |
| Fragaria x ananassa | Fvb2-1 | 3 | CH_fan_14 | 6 | 6 | 2.19467e-16 |
| Fragaria x ananassa | Fvb2-4 | 3 | CH_fan_167 | 5 | 38 | 0.000000327617 |
| Fragaria vesca | Fvb4 | 3 | CH_fve_205 | 3 | 4 | 0.0000116572 |
| Fragaria vesca | Fvb2 | 3 | CH_fve_39 | 6 | 12 | 0.000000000000117957 |
| Gossypium hirsutum | A04 | 3 | CH_ghi_29 | 8 | 9 | 6.09109e-23 |
| Gossypium hirsutum | D04 | 3 | CH_ghi_35 | 7 | 7 | 2.53504e-20 |
| Glycine max | Gm04 | 3 | CH_gma_210 | 3 | 4 | 0.00000142607 |
| Gossypium raimondii | Chr12 | 3 | CH_gra_9 | 10 | 10 | 2.07825e-31 |
| Lotus japonicus | chr4 | 3 | CH_lja_133 | 3 | 4 | 0.00000107369 |
| Lonicera japonica | GWHAAZE00000009 | 3 | CH_lonja_283 | 3 | 4 | 0.00000120493 |
| Malus domestica | Chr05 | 3 | CH_mdo_23 | 7 | 7 | 2.72376e-20 |
| Malus domestica | Chr07 | 3 | CH_mdo_33 | 6 | 6 | 9.57602e-17 |
| Manihot esculenta | Chromosome10 | 3 | CH_mes_10 | 13 | 14 | 1.55477e-39 |
| Oryza sativa ssp. japonica | chr03 | 3 | CH_osa_116 | 3 | 4 | 0.0000000167348 |
| Physcomitrium patens | Chr14 | 3 | CH_ppa_130 | 2 | 2 | 0.000183818 |
| Prunus persica | Pp08 | 3 | CH_ppe_190 | 3 | 3 | 0.0000000834721 |
| Quercus lobata | 6 | 3 | CH_qlo_403 | 3 | 3 | 0.0000000399842 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 3 | CH_rch_23 | 11 | 22 | 1.18671e-24 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_355 | 4 | 8 | 0.00000148555 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_468 | 3 | 3 | 0.0000273672 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 3 | CH_rch_469 | 3 | 3 | 0.0000273672 |
| Rhododendron simsii | chr06 | 3 | CH_rsi_449 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000003 | 3 | CH_sci_29 | 4 | 7 | 0.000000000971925 |
| Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_175 | 3 | 5 | 0.000000206684 |
| Schrenkiella parvula | ch2-4 | 3 | CH_spa_210 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch02 | 3 | CH_spe_455 | 2 | 4 | 0.000800563 |
| Theobroma cacao | Chromosome_2 | 3 | CH_tca_78 | 4 | 4 | 0.000000000148511 |
| Tarenaya hassleriana | NW_010968505.1 | 3 | CH_tha_119 | 3 | 20 | 0.000166532 |
| Tripterygium wilfordii | NC_052249.1 | 3 | CH_twi_329 | 2 | 2 | 0.00083682 |
| Utricularia gibba | unitig_747 | 3 | CH_ugi_99 | 2 | 2 | 0.000246144 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_345 | 2 | 2 | 0.000557543 |
| Vitis vinifera | chr3 | 3 | CH_vvi_413 | 2 | 2 | 0.00076063 |
| Aethionema arabicum | LG-11 | 4 | CH_aar_265 | 2 | 2 | 0.000912326 |
| Acer truncatum | chr2 | 4 | CH_acertr_29 | 5 | 6 | 0.0000000000000622474 |
| Arabidopsis lyrata | scaffold_6 | 4 | CH_aly_19 | 5 | 5 | 0.0000000000000079731 |
| Arabidopsis thaliana | Chr5 | 4 | CH_ath_93 | 4 | 15 | 0.00000000176466 |
| Brassica carinata | ChrB07 | 4 | CH_bca_294 | 3 | 3 | 0.000000559315 |
| Brassica carinata | ChrC03 | 4 | CH_bca_398 | 3 | 5 | 0.00000559168 |
| Brassica napus | A02 | 4 | CH_bna_279 | 3 | 4 | 0.00000318308 |
| Brassica napus | C02 | 4 | CH_bna_398 | 3 | 7 | 0.0000278402 |
| Brassica oleracea | C2 | 4 | CH_bol_217 | 3 | 7 | 0.0000123338 |
| Citrus clementina | scaffold_1 | 4 | CH_ccl_110 | 4 | 6 | 0.0000000017384 |
| Cardamine hirsuta | Chr6 | 4 | CH_chi_8 | 9 | 9 | 5.28569e-28 |
| Carya illinoinensis | Chr08 | 4 | CH_cil_127 | 4 | 4 | 0.000000000050012 |
| Capsella rubella | scaffold_6 | 4 | CH_cru_52 | 4 | 4 | 0.0000000000410454 |
| Davidia involucrata | GWHABJS00000005 | 4 | CH_din_63 | 4 | 4 | 0.000000000123852 |
| Eucalyptus grandis | Chr06 | 4 | CH_egr_877 | 2 | 2 | 0.000877912 |
| Eutrema salsugineum | scaffold_6 | 4 | CH_esa_239 | 2 | 2 | 0.000456899 |
| Fragaria x ananassa | Fvb2-2 | 4 | CH_fan_105 | 4 | 5 | 0.00000000962123 |
| Fragaria x ananassa | Fvb2-3 | 4 | CH_fan_13 | 7 | 11 | 2.34263e-17 |
| Fragaria x ananassa | Fvb2-1 | 4 | CH_fan_14 | 6 | 6 | 2.19467e-16 |
| Fragaria x ananassa | Fvb2-4 | 4 | CH_fan_167 | 5 | 38 | 0.000000327617 |
| Fragaria vesca | Fvb4 | 4 | CH_fve_205 | 3 | 4 | 0.0000116572 |
| Fragaria vesca | Fvb2 | 4 | CH_fve_39 | 6 | 12 | 0.000000000000117957 |
| Gossypium hirsutum | A04 | 4 | CH_ghi_29 | 8 | 9 | 6.09109e-23 |
| Gossypium hirsutum | D04 | 4 | CH_ghi_35 | 7 | 7 | 2.53504e-20 |
| Glycine max | Gm04 | 4 | CH_gma_210 | 3 | 4 | 0.00000142607 |
| Gossypium raimondii | Chr12 | 4 | CH_gra_9 | 10 | 10 | 2.07825e-31 |
| Lotus japonicus | chr4 | 4 | CH_lja_133 | 3 | 4 | 0.00000107369 |
| Lonicera japonica | GWHAAZE00000009 | 4 | CH_lonja_283 | 3 | 4 | 0.00000120493 |
| Malus domestica | Chr05 | 4 | CH_mdo_23 | 7 | 7 | 2.72376e-20 |
| Malus domestica | Chr07 | 4 | CH_mdo_33 | 6 | 6 | 9.57602e-17 |
| Manihot esculenta | Chromosome10 | 4 | CH_mes_10 | 13 | 14 | 1.55477e-39 |
| Oryza sativa ssp. japonica | chr03 | 4 | CH_osa_116 | 3 | 4 | 0.0000000167348 |
| Physcomitrium patens | Chr14 | 4 | CH_ppa_130 | 2 | 2 | 0.000183818 |
| Prunus persica | Pp08 | 4 | CH_ppe_190 | 3 | 3 | 0.0000000834721 |
| Quercus lobata | 6 | 4 | CH_qlo_403 | 3 | 3 | 0.0000000399842 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 4 | CH_rch_23 | 11 | 22 | 1.18671e-24 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_355 | 4 | 8 | 0.00000148555 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_468 | 3 | 3 | 0.0000273672 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 4 | CH_rch_469 | 3 | 3 | 0.0000273672 |
| Rhododendron simsii | chr06 | 4 | CH_rsi_449 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000003 | 4 | CH_sci_29 | 4 | 7 | 0.000000000971925 |
| Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_175 | 3 | 5 | 0.000000206684 |
| Schrenkiella parvula | ch2-4 | 4 | CH_spa_210 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch02 | 4 | CH_spe_455 | 2 | 4 | 0.000800563 |
| Theobroma cacao | Chromosome_2 | 4 | CH_tca_78 | 4 | 4 | 0.000000000148511 |
| Tarenaya hassleriana | NW_010968505.1 | 4 | CH_tha_119 | 3 | 20 | 0.000166532 |
| Tripterygium wilfordii | NC_052249.1 | 4 | CH_twi_329 | 2 | 2 | 0.00083682 |
| Utricularia gibba | unitig_747 | 4 | CH_ugi_99 | 2 | 2 | 0.000246144 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_345 | 2 | 2 | 0.000557543 |
| Vitis vinifera | chr3 | 4 | CH_vvi_413 | 2 | 2 | 0.00076063 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |