Functional clusters

Information

  • Type Gene Ontology
  • Description cysteine synthase activity

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group7 3 CH_ach_283 2 3 0.000977721
Camellia sinensis var. sinensis Chr6 3 CH_camsi_220 3 3 0.0000000315406
Cannabis sativa NC_044375.1 3 CH_cansat_159 3 7 0.00000791901
Capsicum annuum PGAv.1.6.scaffold134 3 CH_can_429 2 2 0.000495663
Carpinus fangiana Cfa02 3 CH_cfa_120 3 3 0.000000301137
Cardamine hirsuta Chr6 3 CH_chi_140 3 3 0.000000860004
Carya illinoinensis Chr07 3 CH_cil_128 4 4 0.000000000050012
Cucumis melo chr02 3 CH_cme_49 4 5 0.000000000311722
Carica papaya supercontig_117 3 CH_cpa_306 2 2 0.000950661
Davidia involucrata GWHABJS00000002 3 CH_din_179 3 6 0.00000420071
Durio zibethinus NW_019168481.1 3 CH_dzi_366 2 2 0.000973326
Fragaria vesca Fvb6 3 CH_fve_262 3 14 0.0000662355
Lotus japonicus chr5 3 CH_lja_124 3 3 0.000000644306
Malus domestica Chr04 3 CH_mdo_168 4 9 0.0000000147275
Manihot esculenta Chromosome08 3 CH_mes_193 3 3 0.000000671187
Medicago truncatula chr1 3 CH_mtr_157 4 4 0.0000000000686679
Medicago truncatula chr4 3 CH_mtr_369 3 4 0.000001671
Nelumbo nucifera chr1 3 CH_nnu_312 2 2 0.000722526
Oryza sativa ssp. japonica chr06 3 CH_osa_171 3 3 0.000000690329
Punica granatum NC_045131.1 3 CH_pgr_181 3 4 0.00000189153
Pisum sativum chr7LG7 3 CH_psa_161 3 8 0.00000799586
Papaver somniferum NC_039358.1 3 CH_pso_97 5 13 0.00000000000196844
Populus trichocarpa Chr05 3 CH_ptr_71 5 5 0.0000000000000663097
Quercus lobata 3 3 CH_qlo_255 5 15 0.0000000000738285
Rhododendron simsii chr05 3 CH_rsi_272 3 8 0.00000349664
Sechium edule LG06 3 CH_sed_128 3 4 0.00000366388
Sequoiadendron giganteum chr3 3 CH_sgi_1326 2 2 0.000730727
Solanum lycopersicum SL4.0ch01 3 CH_sly_221 3 4 0.00000115739
Trochodendron aralioides group2 3 CH_tar_182 3 4 0.00000181637
Vitis vinifera chr14 3 CH_vvi_38 7 12 3.98479e-18
Zea mays 9 3 CH_zma_87 4 15 0.0000000601396
Actinidia chinensis Lachesis_group7 4 CH_ach_283 2 3 0.000977721
Camellia sinensis var. sinensis Chr6 4 CH_camsi_220 3 3 0.0000000315406
Cannabis sativa NC_044375.1 4 CH_cansat_159 3 7 0.00000791901
Capsicum annuum PGAv.1.6.scaffold134 4 CH_can_429 2 2 0.000495663
Carpinus fangiana Cfa02 4 CH_cfa_120 3 3 0.000000301137
Cardamine hirsuta Chr6 4 CH_chi_140 3 3 0.000000860004
Carya illinoinensis Chr07 4 CH_cil_128 4 4 0.000000000050012
Cucumis melo chr02 4 CH_cme_49 4 5 0.000000000311722
Carica papaya supercontig_117 4 CH_cpa_306 2 2 0.000950661
Davidia involucrata GWHABJS00000002 4 CH_din_179 3 6 0.00000420071
Durio zibethinus NW_019168481.1 4 CH_dzi_366 2 2 0.000973326
Fragaria vesca Fvb6 4 CH_fve_262 3 14 0.0000662355
Lotus japonicus chr5 4 CH_lja_124 3 3 0.000000644306
Malus domestica Chr04 4 CH_mdo_168 4 9 0.0000000147275
Manihot esculenta Chromosome08 4 CH_mes_193 3 3 0.000000671187
Medicago truncatula chr1 4 CH_mtr_157 4 4 0.0000000000686679
Medicago truncatula chr4 4 CH_mtr_369 3 4 0.000001671
Nelumbo nucifera chr1 4 CH_nnu_312 2 2 0.000722526
Oryza sativa ssp. japonica chr06 4 CH_osa_171 3 3 0.000000690329
Punica granatum NC_045131.1 4 CH_pgr_181 3 4 0.00000189153
Pisum sativum chr7LG7 4 CH_psa_161 3 8 0.00000799586
Papaver somniferum NC_039358.1 4 CH_pso_97 5 13 0.00000000000196844
Populus trichocarpa Chr05 4 CH_ptr_71 5 5 0.0000000000000663097
Quercus lobata 3 4 CH_qlo_255 5 15 0.0000000000738285
Rhododendron simsii chr05 4 CH_rsi_272 3 8 0.00000349664
Sechium edule LG06 4 CH_sed_128 3 4 0.00000366388
Sequoiadendron giganteum chr3 4 CH_sgi_1326 2 2 0.000730727
Solanum lycopersicum SL4.0ch01 4 CH_sly_221 3 4 0.00000115739
Trochodendron aralioides group2 4 CH_tar_182 3 4 0.00000181637
Vitis vinifera chr14 4 CH_vvi_38 7 12 3.98479e-18
Zea mays 9 4 CH_zma_87 4 15 0.0000000601396

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001