Functional clusters
Information
- Type Gene Ontology
- Description cysteine synthase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group7 | 3 | CH_ach_283 | 2 | 3 | 0.000977721 |
| Camellia sinensis var. sinensis | Chr6 | 3 | CH_camsi_220 | 3 | 3 | 0.0000000315406 |
| Cannabis sativa | NC_044375.1 | 3 | CH_cansat_159 | 3 | 7 | 0.00000791901 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 3 | CH_can_429 | 2 | 2 | 0.000495663 |
| Carpinus fangiana | Cfa02 | 3 | CH_cfa_120 | 3 | 3 | 0.000000301137 |
| Cardamine hirsuta | Chr6 | 3 | CH_chi_140 | 3 | 3 | 0.000000860004 |
| Carya illinoinensis | Chr07 | 3 | CH_cil_128 | 4 | 4 | 0.000000000050012 |
| Cucumis melo | chr02 | 3 | CH_cme_49 | 4 | 5 | 0.000000000311722 |
| Carica papaya | supercontig_117 | 3 | CH_cpa_306 | 2 | 2 | 0.000950661 |
| Davidia involucrata | GWHABJS00000002 | 3 | CH_din_179 | 3 | 6 | 0.00000420071 |
| Durio zibethinus | NW_019168481.1 | 3 | CH_dzi_366 | 2 | 2 | 0.000973326 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_262 | 3 | 14 | 0.0000662355 |
| Lotus japonicus | chr5 | 3 | CH_lja_124 | 3 | 3 | 0.000000644306 |
| Malus domestica | Chr04 | 3 | CH_mdo_168 | 4 | 9 | 0.0000000147275 |
| Manihot esculenta | Chromosome08 | 3 | CH_mes_193 | 3 | 3 | 0.000000671187 |
| Medicago truncatula | chr1 | 3 | CH_mtr_157 | 4 | 4 | 0.0000000000686679 |
| Medicago truncatula | chr4 | 3 | CH_mtr_369 | 3 | 4 | 0.000001671 |
| Nelumbo nucifera | chr1 | 3 | CH_nnu_312 | 2 | 2 | 0.000722526 |
| Oryza sativa ssp. japonica | chr06 | 3 | CH_osa_171 | 3 | 3 | 0.000000690329 |
| Punica granatum | NC_045131.1 | 3 | CH_pgr_181 | 3 | 4 | 0.00000189153 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_161 | 3 | 8 | 0.00000799586 |
| Papaver somniferum | NC_039358.1 | 3 | CH_pso_97 | 5 | 13 | 0.00000000000196844 |
| Populus trichocarpa | Chr05 | 3 | CH_ptr_71 | 5 | 5 | 0.0000000000000663097 |
| Quercus lobata | 3 | 3 | CH_qlo_255 | 5 | 15 | 0.0000000000738285 |
| Rhododendron simsii | chr05 | 3 | CH_rsi_272 | 3 | 8 | 0.00000349664 |
| Sechium edule | LG06 | 3 | CH_sed_128 | 3 | 4 | 0.00000366388 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_1326 | 2 | 2 | 0.000730727 |
| Solanum lycopersicum | SL4.0ch01 | 3 | CH_sly_221 | 3 | 4 | 0.00000115739 |
| Trochodendron aralioides | group2 | 3 | CH_tar_182 | 3 | 4 | 0.00000181637 |
| Vitis vinifera | chr14 | 3 | CH_vvi_38 | 7 | 12 | 3.98479e-18 |
| Zea mays | 9 | 3 | CH_zma_87 | 4 | 15 | 0.0000000601396 |
| Actinidia chinensis | Lachesis_group7 | 4 | CH_ach_283 | 2 | 3 | 0.000977721 |
| Camellia sinensis var. sinensis | Chr6 | 4 | CH_camsi_220 | 3 | 3 | 0.0000000315406 |
| Cannabis sativa | NC_044375.1 | 4 | CH_cansat_159 | 3 | 7 | 0.00000791901 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 4 | CH_can_429 | 2 | 2 | 0.000495663 |
| Carpinus fangiana | Cfa02 | 4 | CH_cfa_120 | 3 | 3 | 0.000000301137 |
| Cardamine hirsuta | Chr6 | 4 | CH_chi_140 | 3 | 3 | 0.000000860004 |
| Carya illinoinensis | Chr07 | 4 | CH_cil_128 | 4 | 4 | 0.000000000050012 |
| Cucumis melo | chr02 | 4 | CH_cme_49 | 4 | 5 | 0.000000000311722 |
| Carica papaya | supercontig_117 | 4 | CH_cpa_306 | 2 | 2 | 0.000950661 |
| Davidia involucrata | GWHABJS00000002 | 4 | CH_din_179 | 3 | 6 | 0.00000420071 |
| Durio zibethinus | NW_019168481.1 | 4 | CH_dzi_366 | 2 | 2 | 0.000973326 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_262 | 3 | 14 | 0.0000662355 |
| Lotus japonicus | chr5 | 4 | CH_lja_124 | 3 | 3 | 0.000000644306 |
| Malus domestica | Chr04 | 4 | CH_mdo_168 | 4 | 9 | 0.0000000147275 |
| Manihot esculenta | Chromosome08 | 4 | CH_mes_193 | 3 | 3 | 0.000000671187 |
| Medicago truncatula | chr1 | 4 | CH_mtr_157 | 4 | 4 | 0.0000000000686679 |
| Medicago truncatula | chr4 | 4 | CH_mtr_369 | 3 | 4 | 0.000001671 |
| Nelumbo nucifera | chr1 | 4 | CH_nnu_312 | 2 | 2 | 0.000722526 |
| Oryza sativa ssp. japonica | chr06 | 4 | CH_osa_171 | 3 | 3 | 0.000000690329 |
| Punica granatum | NC_045131.1 | 4 | CH_pgr_181 | 3 | 4 | 0.00000189153 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_161 | 3 | 8 | 0.00000799586 |
| Papaver somniferum | NC_039358.1 | 4 | CH_pso_97 | 5 | 13 | 0.00000000000196844 |
| Populus trichocarpa | Chr05 | 4 | CH_ptr_71 | 5 | 5 | 0.0000000000000663097 |
| Quercus lobata | 3 | 4 | CH_qlo_255 | 5 | 15 | 0.0000000000738285 |
| Rhododendron simsii | chr05 | 4 | CH_rsi_272 | 3 | 8 | 0.00000349664 |
| Sechium edule | LG06 | 4 | CH_sed_128 | 3 | 4 | 0.00000366388 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_1326 | 2 | 2 | 0.000730727 |
| Solanum lycopersicum | SL4.0ch01 | 4 | CH_sly_221 | 3 | 4 | 0.00000115739 |
| Trochodendron aralioides | group2 | 4 | CH_tar_182 | 3 | 4 | 0.00000181637 |
| Vitis vinifera | chr14 | 4 | CH_vvi_38 | 7 | 12 | 3.98479e-18 |
| Zea mays | 9 | 4 | CH_zma_87 | 4 | 15 | 0.0000000601396 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |