Functional clusters
Information
- Type Gene Ontology
- Description cyclic-nucleotide phosphodiesterase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR01 | 3 | CH_aox_299 | 2 | 2 | 0.000801989 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 3 | CH_bvu_76 | 3 | 3 | 0.0000000411285 |
| Camellia sinensis var. sinensis | Chr8 | 3 | CH_camsi_278 | 3 | 6 | 0.000000252294 |
| Carpinus fangiana | Cfa01 | 3 | CH_cfa_304 | 2 | 2 | 0.000454408 |
| Cardamine hirsuta | Chr7 | 3 | CH_chi_276 | 2 | 2 | 0.000207361 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1759 | 3 | CH_cqu_240 | 3 | 7 | 0.00000412384 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_99 | 3 | 3 | 0.0000000320764 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_265 | 4 | 5 | 0.0000000000150368 |
| Eutrema salsugineum | scaffold_1 | 3 | CH_esa_66 | 3 | 3 | 0.0000000347941 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_152 | 5 | 54 | 0.000000565019 |
| Malus domestica | Chr15 | 3 | CH_mdo_171 | 4 | 11 | 0.0000000178007 |
| Quercus lobata | 5 | 3 | CH_qlo_891 | 2 | 2 | 0.000309773 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 3 | CH_rch_294 | 5 | 46 | 0.000000220358 |
| Simmondsia chinensis | GWHAASQ00000005 | 3 | CH_sci_207 | 2 | 2 | 0.000255428 |
| Sechium edule | LG10 | 3 | CH_sed_239 | 2 | 2 | 0.000428052 |
| Schrenkiella parvula | ch7-4 | 3 | CH_spa_117 | 2 | 2 | 0.000078734 |
| Aquilegia oxysepala | CHR01 | 4 | CH_aox_299 | 2 | 2 | 0.000801989 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 4 | CH_bvu_76 | 3 | 3 | 0.0000000411285 |
| Camellia sinensis var. sinensis | Chr8 | 4 | CH_camsi_278 | 3 | 6 | 0.000000252294 |
| Carpinus fangiana | Cfa01 | 4 | CH_cfa_304 | 2 | 2 | 0.000454408 |
| Cardamine hirsuta | Chr7 | 4 | CH_chi_276 | 2 | 2 | 0.000207361 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1759 | 4 | CH_cqu_240 | 3 | 7 | 0.00000412384 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_99 | 3 | 3 | 0.0000000320764 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_265 | 4 | 5 | 0.0000000000150368 |
| Eutrema salsugineum | scaffold_1 | 4 | CH_esa_66 | 3 | 3 | 0.0000000347941 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_152 | 5 | 54 | 0.000000565019 |
| Malus domestica | Chr15 | 4 | CH_mdo_171 | 4 | 11 | 0.0000000178007 |
| Quercus lobata | 5 | 4 | CH_qlo_891 | 2 | 2 | 0.000309773 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 4 | CH_rch_294 | 5 | 46 | 0.000000220358 |
| Simmondsia chinensis | GWHAASQ00000005 | 4 | CH_sci_207 | 2 | 2 | 0.000255428 |
| Sechium edule | LG10 | 4 | CH_sed_239 | 2 | 2 | 0.000428052 |
| Schrenkiella parvula | ch7-4 | 4 | CH_spa_117 | 2 | 2 | 0.000078734 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0004113 | 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity | 4 |
| GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |