Functional clusters
Information
- Type Gene Ontology
- Description GTPase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_40 | 7 | 7 | 0.000000000044 |
| Cannabis sativa | NC_044379.1 | 3 | CH_cansat_178 | 4 | 4 | 0.0000191413 |
| Capsicum annuum | PGAv.1.6.scaffold1069 | 3 | CH_can_282 | 4 | 4 | 0.0000731633 |
| Corylus avellana | 10 | 3 | CH_cav_233 | 4 | 4 | 0.0000510492 |
| Corylus avellana | 5 | 3 | CH_cav_350 | 4 | 5 | 0.000253898 |
| Chara braunii | BFEA01000221 | 3 | CH_cbr_48 | 5 | 8 | 0.000000324134 |
| Carya illinoinensis | Chr11 | 3 | CH_cil_231 | 5 | 5 | 0.000000865505 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1354 | 3 | CH_cqu_324 | 5 | 8 | 0.0000393943 |
| Capsella rubella | scaffold_2 | 3 | CH_cru_102 | 6 | 7 | 0.0000000352205 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 3 | CH_eca_182 | 5 | 7 | 0.00000347022 |
| Eucalyptus grandis | Chr04 | 3 | CH_egr_700 | 4 | 4 | 0.0000648025 |
| Eucalyptus grandis | Chr02 | 3 | CH_egr_96 | 11 | 11 | 2.97349e-20 |
| Erythranthe guttata | scaffold_1 | 3 | CH_egut_361 | 7 | 41 | 0.000382023 |
| Erythranthe guttata | scaffold_4 | 3 | CH_egut_422 | 4 | 6 | 0.000962773 |
| Gossypium hirsutum | D13 | 3 | CH_ghi_62 | 11 | 14 | 6.09002e-16 |
| Glycine max | Gm01 | 3 | CH_gma_346 | 4 | 4 | 0.000146313 |
| Helianthus annuus | HanXRQChr03 | 3 | CH_han_189 | 6 | 6 | 0.00000000398006 |
| Helianthus annuus | HanXRQChr15 | 3 | CH_han_500 | 4 | 4 | 0.000094704 |
| Lonicera japonica | GWHAAZE00000021 | 3 | CH_lonja_253 | 5 | 5 | 0.000000484604 |
| Malus domestica | Chr14 | 3 | CH_mdo_140 | 7 | 11 | 0.00000000462211 |
| Medicago truncatula | chr2 | 3 | CH_mtr_204 | 7 | 11 | 0.00000000248029 |
| Nelumbo nucifera | chr1 | 3 | CH_nnu_277 | 4 | 6 | 0.000378035 |
| Physcomitrium patens | Chr07 | 3 | CH_ppa_17 | 7 | 10 | 0.00000000915507 |
| Prunus persica | Pp02 | 3 | CH_ppe_236 | 5 | 6 | 0.00000195043 |
| Pisum sativum | chr7LG7 | 3 | CH_psa_290 | 4 | 5 | 0.000170151 |
| Populus trichocarpa | Chr03 | 3 | CH_ptr_440 | 4 | 5 | 0.000623411 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 3 | CH_rch_218 | 7 | 13 | 0.00000000734916 |
| Rhododendron simsii | chr07 | 3 | CH_rsi_88 | 8 | 9 | 0.000000000000850975 |
| Salix brachista | GWHAAZH00000013 | 3 | CH_sbr_266 | 4 | 4 | 0.000160155 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_237 | 12 | 45 | 0.0000000000000848532 |
| Sapria himalayana | scaffold70_2545932 | 3 | CH_shi_100 | 11 | 45 | 0.00000236948 |
| Sapria himalayana | scaffold51_3900769 | 3 | CH_shi_178 | 9 | 36 | 0.000105892 |
| Sapria himalayana | scaffold85_1789505 | 3 | CH_shi_211 | 8 | 28 | 0.000253783 |
| Solanum tuberosum | ST4.03ch11 | 3 | CH_stu_492 | 4 | 5 | 0.000187395 |
| Trochodendron aralioides | group16 | 3 | CH_tar_132 | 7 | 12 | 0.000000111027 |
| Theobroma cacao | Chromosome_5 | 3 | CH_tca_189 | 5 | 6 | 0.0000016633 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_181 | 5 | 7 | 0.0000278867 |
| Arabidopsis lyrata | scaffold_2 | 4 | CH_aly_40 | 7 | 7 | 0.000000000044 |
| Cannabis sativa | NC_044379.1 | 4 | CH_cansat_178 | 4 | 4 | 0.0000191413 |
| Capsicum annuum | PGAv.1.6.scaffold1069 | 4 | CH_can_282 | 4 | 4 | 0.0000731633 |
| Corylus avellana | 10 | 4 | CH_cav_233 | 4 | 4 | 0.0000510492 |
| Corylus avellana | 5 | 4 | CH_cav_350 | 4 | 5 | 0.000253898 |
| Chara braunii | BFEA01000221 | 4 | CH_cbr_48 | 5 | 8 | 0.000000324134 |
| Carya illinoinensis | Chr11 | 4 | CH_cil_231 | 5 | 5 | 0.000000865505 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1354 | 4 | CH_cqu_324 | 5 | 8 | 0.0000393943 |
| Capsella rubella | scaffold_2 | 4 | CH_cru_102 | 6 | 7 | 0.0000000352205 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 4 | CH_eca_182 | 5 | 7 | 0.00000347022 |
| Eucalyptus grandis | Chr04 | 4 | CH_egr_700 | 4 | 4 | 0.0000648025 |
| Eucalyptus grandis | Chr02 | 4 | CH_egr_96 | 11 | 11 | 2.97349e-20 |
| Erythranthe guttata | scaffold_1 | 4 | CH_egut_361 | 7 | 41 | 0.000382023 |
| Erythranthe guttata | scaffold_4 | 4 | CH_egut_422 | 4 | 6 | 0.000962773 |
| Gossypium hirsutum | D13 | 4 | CH_ghi_62 | 11 | 14 | 6.09002e-16 |
| Glycine max | Gm01 | 4 | CH_gma_346 | 4 | 4 | 0.000146313 |
| Helianthus annuus | HanXRQChr03 | 4 | CH_han_189 | 6 | 6 | 0.00000000398006 |
| Helianthus annuus | HanXRQChr15 | 4 | CH_han_500 | 4 | 4 | 0.000094704 |
| Lonicera japonica | GWHAAZE00000021 | 4 | CH_lonja_253 | 5 | 5 | 0.000000484604 |
| Malus domestica | Chr14 | 4 | CH_mdo_140 | 7 | 11 | 0.00000000462211 |
| Medicago truncatula | chr2 | 4 | CH_mtr_204 | 7 | 11 | 0.00000000248029 |
| Nelumbo nucifera | chr1 | 4 | CH_nnu_277 | 4 | 6 | 0.000378035 |
| Physcomitrium patens | Chr07 | 4 | CH_ppa_17 | 7 | 10 | 0.00000000915507 |
| Prunus persica | Pp02 | 4 | CH_ppe_236 | 5 | 6 | 0.00000195043 |
| Pisum sativum | chr7LG7 | 4 | CH_psa_290 | 4 | 5 | 0.000170151 |
| Populus trichocarpa | Chr03 | 4 | CH_ptr_440 | 4 | 5 | 0.000623411 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 4 | CH_rch_218 | 7 | 13 | 0.00000000734916 |
| Rhododendron simsii | chr07 | 4 | CH_rsi_88 | 8 | 9 | 0.000000000000850975 |
| Salix brachista | GWHAAZH00000013 | 4 | CH_sbr_266 | 4 | 4 | 0.000160155 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_237 | 12 | 45 | 0.0000000000000848532 |
| Sapria himalayana | scaffold70_2545932 | 4 | CH_shi_100 | 11 | 45 | 0.00000236948 |
| Sapria himalayana | scaffold51_3900769 | 4 | CH_shi_178 | 9 | 36 | 0.000105892 |
| Sapria himalayana | scaffold85_1789505 | 4 | CH_shi_211 | 8 | 28 | 0.000253783 |
| Solanum tuberosum | ST4.03ch11 | 4 | CH_stu_492 | 4 | 5 | 0.000187395 |
| Trochodendron aralioides | group16 | 4 | CH_tar_132 | 7 | 12 | 0.000000111027 |
| Theobroma cacao | Chromosome_5 | 4 | CH_tca_189 | 5 | 6 | 0.0000016633 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_181 | 5 | 7 | 0.0000278867 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |