Functional clusters
Information
- Type Gene Ontology
- Description 2-isopropylmalate synthase activity
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 3 | CH_acertr_446 | 2 | 2 | 0.000422982 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 3 | CH_arhy_365 | 3 | 7 | 0.00000263442 |
| Camellia sinensis var. sinensis | Chr9 | 3 | CH_camsi_582 | 2 | 3 | 0.000137561 |
| Carya illinoinensis | Chr01 | 3 | CH_cil_394 | 2 | 3 | 0.000185943 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 3 | CH_eca_313 | 2 | 3 | 0.000134614 |
| Glycine max | Gm11 | 3 | CH_gma_172 | 3 | 3 | 0.000000259319 |
| Lotus japonicus | chr1 | 3 | CH_lja_100 | 3 | 4 | 0.000000122717 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_210 | 4 | 25 | 0.0000000407132 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 3 | CH_lsa_332 | 2 | 2 | 0.0000514007 |
| Phaseolus vulgaris | Chr01 | 3 | CH_pvu_174 | 4 | 43 | 0.00000511503 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_496 | 2 | 2 | 0.0000398653 |
| Sapria himalayana | scaffold2_22354274 | 3 | CH_shi_192 | 2 | 3 | 0.000171536 |
| Solanum lycopersicum | SL4.0ch08 | 3 | CH_sly_242 | 3 | 8 | 0.00000289282 |
| Solanum pennellii | Spenn-ch08 | 3 | CH_spe_203 | 3 | 10 | 0.00000355979 |
| Tarenaya hassleriana | NW_010966092.1 | 3 | CH_tha_66 | 3 | 8 | 0.00000163877 |
| Vanilla planifolia | CM028153.1 | 3 | CH_vpl_30 | 4 | 4 | 0.0000000000423603 |
| Acer truncatum | chr3 | 4 | CH_acertr_446 | 2 | 2 | 0.000422982 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 4 | CH_arhy_365 | 3 | 7 | 0.00000263442 |
| Camellia sinensis var. sinensis | Chr9 | 4 | CH_camsi_582 | 2 | 3 | 0.000137561 |
| Carya illinoinensis | Chr01 | 4 | CH_cil_394 | 2 | 3 | 0.000185943 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 4 | CH_eca_313 | 2 | 3 | 0.000134614 |
| Glycine max | Gm11 | 4 | CH_gma_172 | 3 | 3 | 0.000000259319 |
| Lotus japonicus | chr1 | 4 | CH_lja_100 | 3 | 4 | 0.000000122717 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_210 | 4 | 25 | 0.0000000407132 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 4 | CH_lsa_332 | 2 | 2 | 0.0000514007 |
| Phaseolus vulgaris | Chr01 | 4 | CH_pvu_174 | 4 | 43 | 0.00000511503 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_496 | 2 | 2 | 0.0000398653 |
| Sapria himalayana | scaffold2_22354274 | 4 | CH_shi_192 | 2 | 3 | 0.000171536 |
| Solanum lycopersicum | SL4.0ch08 | 4 | CH_sly_242 | 3 | 8 | 0.00000289282 |
| Solanum pennellii | Spenn-ch08 | 4 | CH_spe_203 | 3 | 10 | 0.00000355979 |
| Tarenaya hassleriana | NW_010966092.1 | 4 | CH_tha_66 | 3 | 8 | 0.00000163877 |
| Vanilla planifolia | CM028153.1 | 4 | CH_vpl_30 | 4 | 4 | 0.0000000000423603 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |