Functional clusters

Information

  • Type MapMan
  • Description Coenzyme metabolism.prenylquinone biosynthesis.4-hydroxybenzoate biosynthesis.p-coumarate:CoA ligase (4CL)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_3 1 CH_aly_382 2 2 0.000396027
Arabidopsis thaliana Chr3 1 CH_ath_321 2 2 0.000171895
Brassica carinata ChrB06 1 CH_bca_404 3 8 0.00000322334
Brassica napus A05 1 CH_bna_295 3 6 0.00000170327
Brassica rapa A05 1 CH_bra_102 3 4 0.000000387026
Brassica rapa A03 1 CH_bra_386 2 2 0.000901558
Cannabis sativa NC_044377.1 1 CH_cansat_347 2 2 0.000393985
Cardamine hirsuta Chr3 1 CH_chi_376 2 2 0.000414723
Carya illinoinensis Chr07 1 CH_cil_540 2 2 0.000619828
Cucumis melo chr01 1 CH_cme_99 3 3 0.000000233653
Capsella rubella scaffold_3 1 CH_cru_386 2 2 0.000438693
Cucumis sativus L. chr7 1 CH_csa_125 3 3 0.000000365847
Eutrema salsugineum scaffold_13 1 CH_esa_82 3 3 0.0000000869853
Glycine max Gm17 1 CH_gma_172 3 3 0.000000181524
Nelumbo nucifera chr2 1 CH_nnu_417 2 2 0.000436015
Phaseolus vulgaris Chr03 1 CH_pvu_475 2 2 0.000734727
Sequoiadendron giganteum chr5 1 CH_sgi_1331 2 2 0.000487151
Selaginella moellendorffii scaffold_20 1 CH_smo_151 2 2 0.000560224
Schrenkiella parvula ch3-1 1 CH_spa_93 3 3 0.0000000929892
Vigna mungo CM024074.1 1 CH_vmu_95 3 3 0.000000125253
Arabidopsis lyrata scaffold_3 2 CH_aly_382 2 2 0.000396027
Arabidopsis thaliana Chr3 2 CH_ath_321 2 2 0.000171895
Brassica carinata ChrB06 2 CH_bca_404 3 8 0.00000322334
Brassica rapa A05 2 CH_bra_102 3 4 0.000000387026
Brassica rapa A03 2 CH_bra_386 2 2 0.000901558
Cannabis sativa NC_044377.1 2 CH_cansat_347 2 2 0.000393985
Cardamine hirsuta Chr3 2 CH_chi_376 2 2 0.000414723
Carya illinoinensis Chr07 2 CH_cil_540 2 2 0.000619828
Cucumis melo chr01 2 CH_cme_99 3 3 0.000000233653
Capsella rubella scaffold_3 2 CH_cru_386 2 2 0.000438693
Cucumis sativus L. chr7 2 CH_csa_125 3 3 0.000000365847
Eutrema salsugineum scaffold_13 2 CH_esa_82 3 3 0.0000000869853
Glycine max Gm17 2 CH_gma_172 3 3 0.000000181524
Nelumbo nucifera chr2 2 CH_nnu_417 2 2 0.000436015
Phaseolus vulgaris Chr03 2 CH_pvu_475 2 2 0.000734727
Sequoiadendron giganteum chr5 2 CH_sgi_1331 2 2 0.000487151
Selaginella moellendorffii scaffold_20 2 CH_smo_151 2 2 0.000560224
Schrenkiella parvula ch3-1 2 CH_spa_93 3 3 0.0000000929892
Vigna mungo CM024074.1 2 CH_vmu_95 3 3 0.000000125253

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001