Functional clusters

Information

  • Type MapMan
  • Description Coenzyme metabolism.chlorophyll metabolism.chlorophyll catabolism.PAO-phyllobilin pathway.magnesium dechelatase (SGR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_6 1 CH_aly_367 2 2 0.000396027
Arabidopsis thaliana Chr4 1 CH_ath_311 2 2 0.000171895
Cardamine hirsuta Chr8 1 CH_chi_365 2 2 0.000414723
Capsella rubella scaffold_6 1 CH_cru_371 2 2 0.000438693
Eutrema salsugineum scaffold_3 1 CH_esa_279 2 2 0.000456899
Glycine max Gm17 1 CH_gma_563 2 2 0.000569336
Nicotiana tabacum Nitab4.5_0001714 1 CH_nta_142 2 2 0.000329182
Papaver somniferum NC_039365.1 1 CH_pso_584 2 2 0.000337849
Salix brachista GWHAAZH00000003 1 CH_sbr_339 2 2 0.000378084
Sequoiadendron giganteum chr4 1 CH_sgi_1230 2 2 0.000292291
Solanum tuberosum ST4.03ch12 1 CH_stu_518 2 2 0.000307472
Vitis vinifera chr2 1 CH_vvi_385 2 2 0.000456378
Arabidopsis lyrata scaffold_6 2 CH_aly_367 2 2 0.000396027
Arabidopsis thaliana Chr4 2 CH_ath_311 2 2 0.000171895
Cardamine hirsuta Chr8 2 CH_chi_365 2 2 0.000414723
Capsella rubella scaffold_6 2 CH_cru_371 2 2 0.000438693
Eutrema salsugineum scaffold_3 2 CH_esa_279 2 2 0.000456899
Glycine max Gm17 2 CH_gma_563 2 2 0.000569336
Nicotiana tabacum Nitab4.5_0001714 2 CH_nta_142 2 2 0.000329182
Papaver somniferum NC_039365.1 2 CH_pso_584 2 2 0.000337849
Salix brachista GWHAAZH00000003 2 CH_sbr_339 2 2 0.000378084
Sequoiadendron giganteum chr4 2 CH_sgi_1230 2 2 0.000292291
Solanum tuberosum ST4.03ch12 2 CH_stu_518 2 2 0.000307472
Vitis vinifera chr2 2 CH_vvi_385 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001