Functional clusters

Information

  • Type MapMan
  • Description Coenzyme metabolism.chlorophyll metabolism.chlorophyll catabolism.chlorophyllase (CLH)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR05 1 CH_aox_64 3 3 0.0000000385927
Amborella trichopoda AmTr_v1.0_scaffold00002 1 CH_atr_324 2 5 0.000794313
Camellia sinensis var. sinensis Chr5 1 CH_camsi_329 3 6 0.000000630703
Capsicum annuum PGAv.1.6.scaffold231 1 CH_can_413 2 2 0.000495663
Citrus clementina scaffold_3 1 CH_ccl_457 2 2 0.000492187
Chenopodium quinoa C_Quinoa_Scaffold_1280 1 CH_cqu_151 3 3 0.000000117869
Durio zibethinus NW_019167849.1 1 CH_dzi_388 2 3 0.000834235
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_438 2 3 0.000403835
Fragaria vesca Fvb4 1 CH_fve_414 2 2 0.000353461
Glycine max Gm07 1 CH_gma_584 2 3 0.000683172
Lupinus albus Lalb_Chr19 1 CH_lal_246 2 3 0.000157443
Lonicera japonica GWHAAZE00000006 1 CH_lonja_211 3 5 0.000000215174
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_381 2 3 0.000154198
Malus domestica Chr03 1 CH_mdo_696 2 2 0.000568817
Malus domestica Chr16 1 CH_mdo_697 2 2 0.000568817
Marchantia polymorpha scaffold_8 1 CH_mpo_34 3 3 0.000000182973
Medicago truncatula chr1 1 CH_mtr_630 2 2 0.000123259
Nelumbo nucifera chr1 1 CH_nnu_291 2 3 0.0000436015
Punica granatum NC_045128.1 1 CH_pgr_227 2 2 0.0000750356
Sequoiadendron giganteum chr8 1 CH_sgi_167 5 6 0.00000000000000532259
Selaginella moellendorffii scaffold_7 1 CH_smo_165 2 3 0.000840271
Selenicereus undatus Scaffold_10417 1 CH_sun_215 2 2 0.000217992
Trochodendron aralioides group1 1 CH_tar_451 2 2 0.00036022
Vigna mungo CM024077.1 1 CH_vmu_307 2 2 0.000193842
Vanilla planifolia CM028162.1 1 CH_vpl_194 2 2 0.000073888
Vitis vinifera chr7 1 CH_vvi_184 3 6 0.000000694157
Aquilegia oxysepala CHR05 2 CH_aox_64 3 3 0.0000000385927
Amborella trichopoda AmTr_v1.0_scaffold00002 2 CH_atr_324 2 5 0.000794313
Camellia sinensis var. sinensis Chr5 2 CH_camsi_329 3 6 0.000000630703
Capsicum annuum PGAv.1.6.scaffold231 2 CH_can_413 2 2 0.000495663
Citrus clementina scaffold_3 2 CH_ccl_457 2 2 0.000492187
Chenopodium quinoa C_Quinoa_Scaffold_1280 2 CH_cqu_151 3 3 0.000000117869
Durio zibethinus NW_019167849.1 2 CH_dzi_388 2 3 0.000834235
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_438 2 3 0.000403835
Eucalyptus grandis Chr02 2 CH_egr_350 3 3 0.00000000513834
Fragaria vesca Fvb4 2 CH_fve_414 2 2 0.000353461
Glycine max Gm07 2 CH_gma_584 2 3 0.000683172
Lupinus albus Lalb_Chr19 2 CH_lal_246 2 3 0.000157443
Lonicera japonica GWHAAZE00000006 2 CH_lonja_211 3 5 0.000000215174
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_381 2 3 0.000154198
Malus domestica Chr03 2 CH_mdo_696 2 2 0.000568817
Malus domestica Chr16 2 CH_mdo_697 2 2 0.000568817
Marchantia polymorpha scaffold_8 2 CH_mpo_34 3 3 0.000000182973
Nelumbo nucifera chr1 2 CH_nnu_291 2 3 0.0000436015
Punica granatum NC_045128.1 2 CH_pgr_227 2 2 0.0000750356
Sequoiadendron giganteum chr8 2 CH_sgi_167 5 6 0.00000000000000532259
Selaginella moellendorffii scaffold_7 2 CH_smo_165 2 3 0.000840271
Selenicereus undatus Scaffold_10417 2 CH_sun_215 2 2 0.000217992
Trochodendron aralioides group1 2 CH_tar_451 2 2 0.00036022
Vigna mungo CM024077.1 2 CH_vmu_307 2 2 0.000193842
Vanilla planifolia CM028162.1 2 CH_vpl_194 2 2 0.000073888
Vitis vinifera chr7 2 CH_vvi_184 3 6 0.000000694157

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001