Functional clusters

Information

  • Type MapMan
  • Description Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen lyase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-10 1 CH_aar_24 5 5 0.000000000000240116
Arabidopsis lyrata scaffold_5 1 CH_aly_179 3 3 0.00000365965
Arabidopsis lyrata scaffold_2 1 CH_aly_180 3 3 0.00000365965
Arabidopsis lyrata scaffold_4 1 CH_aly_195 3 4 0.0000146334
Arabidopsis lyrata scaffold_5 1 CH_aly_81 4 5 0.00000000784825
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_328 3 3 0.00000309229
Arabidopsis thaliana Chr1 1 CH_ath_178 3 4 0.00000224043
Arabidopsis thaliana Chr3 1 CH_ath_187 3 5 0.00000560027
Arabidopsis thaliana Chr3 1 CH_ath_79 4 7 0.00000000336895
Brassica carinata ChrC02 1 CH_bca_108 5 10 0.000000000539975
Brassica carinata ChrC03 1 CH_bca_156 4 4 0.00000000478212
Brassica carinata ChrC08 1 CH_bca_73 5 7 0.0000000000450487
Brassica napus C04 1 CH_bna_122 5 12 0.00000000244089
Brassica napus A02 1 CH_bna_195 4 6 0.000000097915
Brassica napus C06 1 CH_bna_375 4 16 0.0000118344
Brassica napus A07 1 CH_bna_387 3 3 0.0000135436
Brassica napus C02 1 CH_bna_388 3 3 0.0000135436
Brassica napus C06 1 CH_bna_389 3 3 0.0000135436
Brassica napus A04 1 CH_bna_519 3 5 0.000135336
Brassica oleracea C4 1 CH_bol_156 4 14 0.00000248233
Brassica oleracea C6 1 CH_bol_183 3 3 0.00000585591
Brassica rapa A07 1 CH_bra_155 3 3 0.00000808678
Brassica rapa A04 1 CH_bra_48 5 8 0.000000000115053
Camellia sinensis var. sinensis Chr15 1 CH_camsi_226 4 8 0.0000000276149
Camellia sinensis var. sinensis Chr13 1 CH_camsi_281 5 46 0.000000135319
Capsicum annuum PGAv.1.6.scaffold803 1 CH_can_112 4 6 0.0000000253795
Corylus avellana 1 1 CH_cav_202 3 6 0.0000211472
Coffea canephora chr2 1 CH_ccan_147 4 89 0.00000918244
Coffea canephora chr6 1 CH_ccan_368 3 39 0.000808696
Coffea canephora chr4 1 CH_ccan_69 4 17 0.0000000225549
Citrus clementina scaffold_2 1 CH_ccl_106 6 25 0.0000000043186
Citrus clementina scaffold_1 1 CH_ccl_127 4 4 0.0000000290661
Citrus clementina scaffold_4 1 CH_ccl_39 7 11 0.00000000000000701473
Carpinus fangiana Cfa02 1 CH_cfa_143 3 3 0.00000189286
Cardamine hirsuta Chr5 1 CH_chi_14 7 7 4.32954e-19
Cardamine hirsuta Chr2 1 CH_chi_84 4 4 0.00000000384034
Capsella rubella scaffold_5 1 CH_cru_12 7 8 3.06351e-18
Capsella rubella scaffold_5 1 CH_cru_227 3 4 0.0000261626
Capsella rubella scaffold_2 1 CH_cru_88 4 4 0.00000000358854
Daucus carota DCARv2_Chr6 1 CH_dca_153 3 3 0.00000222097
Daucus carota DCARv2_Chr2 1 CH_dca_154 3 3 0.00000222097
Davidia involucrata GWHABJS00000006 1 CH_din_14 6 7 9.1481e-16
Durio zibethinus NW_019167993.1 1 CH_dzi_132 3 3 0.00000146619
Durio zibethinus NW_019167960.1 1 CH_dzi_172 3 5 0.0000146551
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_205 3 4 0.00000439671
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_60 5 12 0.0000000000481548
Eucalyptus grandis Chr10 1 CH_egr_212 5 5 0.00000000000102348
Eutrema salsugineum scaffold_19 1 CH_esa_54 4 4 0.00000000132621
Eutrema salsugineum scaffold_9 1 CH_esa_55 4 4 0.00000000132621
Fragaria vesca Fvb1 1 CH_fve_209 3 3 0.00000291523
Gossypium hirsutum A11 1 CH_ghi_402 3 3 0.00000830981
Lupinus albus Lalb_Chr25 1 CH_lal_101 3 3 0.000000495806
Lonicera japonica GWHAAZE00000005 1 CH_lonja_15 10 11 2.69174e-25
Lonicera japonica GWHAAZE00000004 1 CH_lonja_432 3 4 0.000167075
Lonicera japonica GWHAAZE00000009 1 CH_lonja_45 7 7 3.74201e-17
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_298 3 5 0.000018023
Magnolia biondii Chr15 1 CH_mbi_137 6 80 0.0000000221938
Medicago truncatula chr7 1 CH_mtr_131 5 6 0.0000000000103495
Medicago truncatula chr4 1 CH_mtr_240 5 17 0.0000000106272
Medicago truncatula chr8 1 CH_mtr_291 4 7 0.000000127663
Medicago truncatula chr2 1 CH_mtr_423 3 3 0.00000740663
Medicago truncatula chr2 1 CH_mtr_558 3 5 0.0000740085
Punica granatum NC_045132.1 1 CH_pgr_191 3 7 0.0000649573
Populus trichocarpa Chr16 1 CH_ptr_220 3 3 0.00000110251
Quercus lobata 6 1 CH_qlo_115 6 7 0.00000000000000156748
Quercus lobata 6 1 CH_qlo_122 6 8 0.00000000000000626796
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_515 3 8 0.0000606814
Striga asiatica scaffold105 1 CH_sas_161 2 2 0.000938057
Salvia bowleyana GWHASIU00000002 1 CH_sbo_98 4 6 0.0000000013983
Salix brachista GWHAAZH00000015 1 CH_sbr_7 12 38 2.03015e-25
Simmondsia chinensis GWHAASQ00000018 1 CH_sci_100 3 4 0.00000365293
Sequoiadendron giganteum chr4 1 CH_sgi_603 3 3 0.00000129578
Sequoiadendron giganteum chr1 1 CH_sgi_604 3 3 0.00000129578
Solanum lycopersicum SL4.0ch03 1 CH_sly_113 4 4 0.00000000110411
Schrenkiella parvula ch5-1 1 CH_spa_128 3 3 0.00000338481
Schrenkiella parvula ch5-7 1 CH_spa_58 4 4 0.00000000146586
Solanum pennellii Spenn-ch03 1 CH_spe_186 3 3 0.00000108022
Solanum tuberosum ST4.03ch03 1 CH_stu_113 4 4 0.00000000123548
Selenicereus undatus Scaffold_3410 1 CH_sun_167 3 14 0.000161142
Trochodendron aralioides group4 1 CH_tar_175 3 3 0.00000154633
Theobroma cacao Chromosome_2 1 CH_tca_103 4 4 0.00000000160887
Theobroma cacao Chromosome_5 1 CH_tca_256 3 5 0.0000365831
Trifolium pratense Tp57577_TGAC_v2_LG4 1 CH_tpr_92 4 9 0.000000117062
Tripterygium wilfordii NC_052251.1 1 CH_twi_8 8 10 1.03836e-21
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_159 3 4 0.00000435105
Vitis vinifera chr10 1 CH_vvi_143 4 4 0.00000004748
Vitis vinifera chr4 1 CH_vvi_22 9 11 2.44868e-21
Vitis vinifera chr11 1 CH_vvi_242 3 3 0.0000430463
Vitis vinifera chr17 1 CH_vvi_243 3 3 0.0000430463
Zea mays 8 1 CH_zma_6 8 10 5.55649e-20
Zea mays 1 1 CH_zma_65 4 5 0.0000000476029
Aethionema arabicum LG-10 2 CH_aar_24 5 5 0.000000000000240116
Arabidopsis lyrata scaffold_5 2 CH_aly_179 3 3 0.00000365965
Arabidopsis lyrata scaffold_2 2 CH_aly_180 3 3 0.00000365965
Arabidopsis lyrata scaffold_4 2 CH_aly_195 3 4 0.0000146334
Arabidopsis lyrata scaffold_5 2 CH_aly_81 4 5 0.00000000784825
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_328 3 3 0.00000309229
Arabidopsis thaliana Chr1 2 CH_ath_178 3 4 0.00000224043
Arabidopsis thaliana Chr3 2 CH_ath_187 3 5 0.00000560027
Arabidopsis thaliana Chr3 2 CH_ath_79 4 7 0.00000000336895
Brassica carinata ChrC02 2 CH_bca_108 5 10 0.000000000539975
Brassica carinata ChrC03 2 CH_bca_156 4 4 0.00000000478212
Brassica carinata ChrC08 2 CH_bca_73 5 7 0.0000000000450487
Brassica oleracea C4 2 CH_bol_156 4 14 0.00000248233
Brassica oleracea C6 2 CH_bol_183 3 3 0.00000585591
Brassica rapa A07 2 CH_bra_155 3 3 0.00000808678
Brassica rapa A04 2 CH_bra_48 5 8 0.000000000115053
Camellia sinensis var. sinensis Chr15 2 CH_camsi_226 4 8 0.0000000276149
Camellia sinensis var. sinensis Chr13 2 CH_camsi_281 5 46 0.000000135319
Capsicum annuum PGAv.1.6.scaffold803 2 CH_can_112 4 6 0.0000000253795
Corylus avellana 1 2 CH_cav_202 3 6 0.0000211472
Coffea canephora chr2 2 CH_ccan_147 4 89 0.00000918244
Coffea canephora chr6 2 CH_ccan_368 3 39 0.000808696
Coffea canephora chr4 2 CH_ccan_69 4 17 0.0000000225549
Citrus clementina scaffold_2 2 CH_ccl_106 6 25 0.0000000043186
Citrus clementina scaffold_1 2 CH_ccl_127 4 4 0.0000000290661
Citrus clementina scaffold_4 2 CH_ccl_39 7 11 0.00000000000000701473
Carpinus fangiana Cfa02 2 CH_cfa_143 3 3 0.00000189286
Cardamine hirsuta Chr5 2 CH_chi_14 7 7 4.32954e-19
Cardamine hirsuta Chr2 2 CH_chi_84 4 4 0.00000000384034
Capsella rubella scaffold_5 2 CH_cru_12 7 8 3.06351e-18
Capsella rubella scaffold_5 2 CH_cru_227 3 4 0.0000261626
Capsella rubella scaffold_2 2 CH_cru_88 4 4 0.00000000358854
Daucus carota DCARv2_Chr6 2 CH_dca_153 3 3 0.00000222097
Daucus carota DCARv2_Chr2 2 CH_dca_154 3 3 0.00000222097
Davidia involucrata GWHABJS00000006 2 CH_din_14 6 7 9.1481e-16
Durio zibethinus NW_019167993.1 2 CH_dzi_132 3 3 0.00000146619
Durio zibethinus NW_019167960.1 2 CH_dzi_172 3 5 0.0000146551
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_205 3 4 0.00000439671
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_60 5 12 0.0000000000481548
Eucalyptus grandis Chr10 2 CH_egr_212 5 5 0.00000000000102348
Eucalyptus grandis Chr01 2 CH_egr_574 3 3 0.00000497906
Eucalyptus grandis Chr03 2 CH_egr_726 3 6 0.0000994675
Eutrema salsugineum scaffold_19 2 CH_esa_54 4 4 0.00000000132621
Eutrema salsugineum scaffold_9 2 CH_esa_55 4 4 0.00000000132621
Fragaria vesca Fvb1 2 CH_fve_209 3 3 0.00000291523
Gossypium hirsutum A11 2 CH_ghi_402 3 3 0.00000830981
Lupinus albus Lalb_Chr25 2 CH_lal_101 3 3 0.000000495806
Lotus japonicus chr4 2 CH_lja_234 3 6 0.0000337213
Lonicera japonica GWHAAZE00000005 2 CH_lonja_15 10 11 2.69174e-25
Lonicera japonica GWHAAZE00000004 2 CH_lonja_432 3 4 0.000167075
Lonicera japonica GWHAAZE00000009 2 CH_lonja_45 7 7 3.74201e-17
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_298 3 5 0.000018023
Magnolia biondii Chr15 2 CH_mbi_137 6 80 0.0000000221938
Punica granatum NC_045132.1 2 CH_pgr_191 3 7 0.0000649573
Populus trichocarpa Chr16 2 CH_ptr_220 3 3 0.00000110251
Quercus lobata 6 2 CH_qlo_115 6 7 0.00000000000000156748
Quercus lobata 6 2 CH_qlo_122 6 8 0.00000000000000626796
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_515 3 8 0.0000606814
Striga asiatica scaffold105 2 CH_sas_161 2 2 0.000938057
Salvia bowleyana GWHASIU00000002 2 CH_sbo_98 4 6 0.0000000013983
Salix brachista GWHAAZH00000015 2 CH_sbr_7 12 38 2.03015e-25
Simmondsia chinensis GWHAASQ00000018 2 CH_sci_100 3 4 0.00000365293
Sequoiadendron giganteum chr4 2 CH_sgi_603 3 3 0.00000129578
Sequoiadendron giganteum chr1 2 CH_sgi_604 3 3 0.00000129578
Solanum lycopersicum SL4.0ch03 2 CH_sly_113 4 4 0.00000000110411
Schrenkiella parvula ch5-1 2 CH_spa_128 3 3 0.00000338481
Schrenkiella parvula ch5-7 2 CH_spa_58 4 4 0.00000000146586
Solanum pennellii Spenn-ch03 2 CH_spe_186 3 3 0.00000108022
Solanum tuberosum ST4.03ch03 2 CH_stu_113 4 4 0.00000000123548
Selenicereus undatus Scaffold_3410 2 CH_sun_167 3 14 0.000161142
Trochodendron aralioides group4 2 CH_tar_175 3 3 0.00000154633
Theobroma cacao Chromosome_2 2 CH_tca_103 4 4 0.00000000160887
Theobroma cacao Chromosome_5 2 CH_tca_256 3 5 0.0000365831
Trifolium pratense Tp57577_TGAC_v2_LG4 2 CH_tpr_92 4 9 0.000000117062
Tripterygium wilfordii NC_052251.1 2 CH_twi_8 8 10 1.03836e-21
Vaccinium macrocarpon chr3_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_159 3 4 0.00000435105
Vitis vinifera chr10 2 CH_vvi_143 4 4 0.00000004748
Vitis vinifera chr4 2 CH_vvi_22 9 11 2.44868e-21
Vitis vinifera chr11 2 CH_vvi_242 3 3 0.0000430463
Vitis vinifera chr17 2 CH_vvi_243 3 3 0.0000430463
Zea mays 8 2 CH_zma_6 8 10 5.55649e-20
Zea mays 1 2 CH_zma_65 4 5 0.0000000476029

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001