Functional clusters
Information
- Type MapMan
- Description Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen lyase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_368 | 1 | CH_aag_111 | 4 | 23 | 0.0000812896 |
| Actinidia chinensis | Lachesis_group6 | 1 | CH_ach_99 | 3 | 4 | 0.0000718419 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_181 | 3 | 3 | 0.00000444386 |
| Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_200 | 3 | 4 | 0.0000177687 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 1 | CH_amhyb_101 | 3 | 5 | 0.0000303761 |
| Brassica napus | C08 | 1 | CH_bna_390 | 4 | 16 | 0.0000137041 |
| Brassica oleracea | C4 | 1 | CH_bol_189 | 3 | 3 | 0.0000072037 |
| Camellia sinensis var. sinensis | Chr8 | 1 | CH_camsi_600 | 3 | 5 | 0.00012793 |
| Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_888 | 3 | 8 | 0.000715361 |
| Capsicum annuum | PGAv.1.6.scaffold377 | 1 | CH_can_76 | 5 | 7 | 0.000000000591385 |
| Capsicum annuum | PGAv.1.6.scaffold594 | 1 | CH_can_77 | 5 | 7 | 0.000000000591385 |
| Corylus avellana | 5 | 1 | CH_cav_170 | 5 | 32 | 0.00000336846 |
| Corchorus olitorius | AWUE01019685.1 | 1 | CH_col_43 | 3 | 5 | 0.0000447481 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2947 | 1 | CH_cqu_463 | 3 | 7 | 0.000305929 |
| Fragaria x ananassa | Fvb6-1 | 1 | CH_fan_304 | 3 | 3 | 0.000016696 |
| Fragaria x ananassa | Fvb3-2 | 1 | CH_fan_652 | 3 | 8 | 0.000933117 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_444 | 3 | 8 | 0.000588588 |
| Gossypium raimondii | Chr09 | 1 | CH_gra_213 | 3 | 3 | 0.0000126105 |
| Hydrangea macrophylla | Hma1.2p1_0262F.1 | 1 | CH_hma_86 | 3 | 4 | 0.0000122127 |
| Lupinus albus | Lalb_Chr21 | 1 | CH_lal_132 | 3 | 3 | 0.00000471015 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_141 | 5 | 6 | 0.00000000264918 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_246 | 6 | 34 | 0.000000908375 |
| Lonicera japonica | GWHAAZE00000003 | 1 | CH_lonja_36 | 10 | 21 | 1.27501e-18 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_422 | 4 | 12 | 0.00013391 |
| Lonicera japonica | GWHAAZE00000021 | 1 | CH_lonja_97 | 6 | 7 | 0.00000000000490553 |
| Magnolia biondii | Chr17 | 1 | CH_mbi_25 | 10 | 42 | 1.25331e-16 |
| Magnolia biondii | Chr14 | 1 | CH_mbi_370 | 3 | 4 | 0.0000651856 |
| Magnolia biondii | Chr01 | 1 | CH_mbi_622 | 3 | 5 | 0.000650733 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_87 | 8 | 65 | 0.00000000043406 |
| Malus domestica | Chr10 | 1 | CH_mdo_673 | 3 | 12 | 0.000539723 |
| Nicotiana tabacum | Nitab4.5_0000037 | 1 | CH_nta_13 | 5 | 7 | 0.000000000141159 |
| Olea europaea | chr15 | 1 | CH_oeu_111 | 3 | 3 | 0.00000568452 |
| Petunia axillaris | Peaxi162Scf00014 | 1 | CH_pax_66 | 4 | 6 | 0.000000021379 |
| Pisum sativum | chr2LG1 | 1 | CH_psa_133 | 4 | 6 | 0.000000421274 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_231 | 3 | 4 | 0.0000120321 |
| Simmondsia chinensis | GWHAASQ00000003 | 1 | CH_sci_8 | 8 | 11 | 1.2386e-18 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_1268 | 3 | 3 | 0.000390642 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_472 | 6 | 16 | 0.0000000263347 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_653 | 5 | 15 | 0.00000488567 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_188 | 4 | 10 | 0.000000615743 |
| Selaginella moellendorffii | scaffold_1 | 1 | CH_smo_99 | 3 | 5 | 0.000126569 |
| Solanum tuberosum | ST4.03ch00 | 1 | CH_stu_162 | 4 | 5 | 0.0000000552933 |
| Selenicereus undatus | Scaffold_33680 | 1 | CH_sun_88 | 4 | 15 | 0.0000233167 |
| Selenicereus undatus | Scaffold_33680 | 1 | CH_sun_9 | 6 | 12 | 0.00000000000966157 |
| Trochodendron aralioides | group9 | 1 | CH_tar_31 | 6 | 12 | 0.000000000000877998 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 1 | CH_tpr_192 | 3 | 4 | 0.0000233695 |
| Vanilla planifolia | CM028161.1 | 1 | CH_vpl_382 | 3 | 7 | 0.000836044 |
| Vitis vinifera | chr18_random | 1 | CH_vvi_13 | 15 | 54 | 3.31601e-26 |
| Vitis vinifera | chrUn | 1 | CH_vvi_130 | 8 | 80 | 0.0000000217931 |
| Anthoceros agrestis | Sc2ySwM_368 | 2 | CH_aag_111 | 4 | 23 | 0.0000812896 |
| Actinidia chinensis | Lachesis_group6 | 2 | CH_ach_99 | 3 | 4 | 0.0000718419 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_181 | 3 | 3 | 0.00000444386 |
| Arabidopsis lyrata | scaffold_4 | 2 | CH_aly_200 | 3 | 4 | 0.0000177687 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 2 | CH_amhyb_101 | 3 | 5 | 0.0000303761 |
| Brassica oleracea | C4 | 2 | CH_bol_189 | 3 | 3 | 0.0000072037 |
| Camellia sinensis var. sinensis | Chr8 | 2 | CH_camsi_600 | 3 | 5 | 0.00012793 |
| Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_888 | 3 | 8 | 0.000715361 |
| Capsicum annuum | PGAv.1.6.scaffold377 | 2 | CH_can_76 | 5 | 7 | 0.000000000591385 |
| Capsicum annuum | PGAv.1.6.scaffold594 | 2 | CH_can_77 | 5 | 7 | 0.000000000591385 |
| Corylus avellana | 5 | 2 | CH_cav_170 | 5 | 32 | 0.00000336846 |
| Corchorus olitorius | AWUE01019685.1 | 2 | CH_col_43 | 3 | 5 | 0.0000447481 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2947 | 2 | CH_cqu_463 | 3 | 7 | 0.000305929 |
| Eucalyptus grandis | Chr04 | 2 | CH_egr_326 | 4 | 4 | 0.00000000233143 |
| Eucalyptus grandis | Chr06 | 2 | CH_egr_573 | 3 | 3 | 0.00000497906 |
| Fragaria x ananassa | Fvb6-1 | 2 | CH_fan_304 | 3 | 3 | 0.000016696 |
| Fragaria x ananassa | Fvb3-2 | 2 | CH_fan_652 | 3 | 8 | 0.000933117 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_444 | 3 | 8 | 0.000588588 |
| Gossypium raimondii | Chr09 | 2 | CH_gra_213 | 3 | 3 | 0.0000126105 |
| Hydrangea macrophylla | Hma1.2p1_0262F.1 | 2 | CH_hma_86 | 3 | 4 | 0.0000122127 |
| Lupinus albus | Lalb_Chr21 | 2 | CH_lal_132 | 3 | 3 | 0.00000471015 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_141 | 5 | 6 | 0.00000000264918 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_246 | 6 | 34 | 0.000000908375 |
| Lonicera japonica | GWHAAZE00000003 | 2 | CH_lonja_36 | 10 | 21 | 1.27501e-18 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_422 | 4 | 12 | 0.00013391 |
| Lonicera japonica | GWHAAZE00000021 | 2 | CH_lonja_97 | 6 | 7 | 0.00000000000490553 |
| Magnolia biondii | Chr17 | 2 | CH_mbi_25 | 10 | 42 | 1.25331e-16 |
| Magnolia biondii | Chr14 | 2 | CH_mbi_370 | 3 | 4 | 0.0000651856 |
| Magnolia biondii | Chr01 | 2 | CH_mbi_622 | 3 | 5 | 0.000650733 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_87 | 8 | 65 | 0.00000000043406 |
| Malus domestica | Chr10 | 2 | CH_mdo_673 | 3 | 12 | 0.000539723 |
| Nicotiana tabacum | Nitab4.5_0000037 | 2 | CH_nta_13 | 5 | 7 | 0.000000000141159 |
| Olea europaea | chr15 | 2 | CH_oeu_111 | 3 | 3 | 0.00000568452 |
| Petunia axillaris | Peaxi162Scf00014 | 2 | CH_pax_66 | 4 | 6 | 0.000000021379 |
| Pisum sativum | chr2LG1 | 2 | CH_psa_133 | 4 | 6 | 0.000000421274 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_231 | 3 | 4 | 0.0000120321 |
| Simmondsia chinensis | GWHAASQ00000003 | 2 | CH_sci_8 | 8 | 11 | 1.2386e-18 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_1268 | 3 | 3 | 0.000390642 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_472 | 6 | 16 | 0.0000000263347 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_653 | 5 | 15 | 0.00000488567 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_188 | 4 | 10 | 0.000000615743 |
| Selaginella moellendorffii | scaffold_1 | 2 | CH_smo_99 | 3 | 5 | 0.000126569 |
| Solanum tuberosum | ST4.03ch00 | 2 | CH_stu_162 | 4 | 5 | 0.0000000552933 |
| Selenicereus undatus | Scaffold_33680 | 2 | CH_sun_88 | 4 | 15 | 0.0000233167 |
| Selenicereus undatus | Scaffold_33680 | 2 | CH_sun_9 | 6 | 12 | 0.00000000000966157 |
| Trochodendron aralioides | group9 | 2 | CH_tar_31 | 6 | 12 | 0.000000000000877998 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 2 | CH_tpr_192 | 3 | 4 | 0.0000233695 |
| Vanilla planifolia | CM028161.1 | 2 | CH_vpl_382 | 3 | 7 | 0.000836044 |
| Vitis vinifera | chr18_random | 2 | CH_vvi_13 | 15 | 54 | 3.31601e-26 |
| Vitis vinifera | chrUn | 2 | CH_vvi_130 | 8 | 80 | 0.0000000217931 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |