Functional clusters
Information
- Type MapMan
- Description Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase acting on peptide bond (peptidase)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 1 | CH_aar_131 | 4 | 26 | 0.0000613366 |
| Acer truncatum | chr13 | 1 | CH_acertr_211 | 3 | 3 | 0.00000991516 |
| Amborella trichopoda | AmTr_v1.0_scaffold00090 | 1 | CH_atr_146 | 3 | 4 | 0.0000503334 |
| Amborella trichopoda | AmTr_v1.0_scaffold00061 | 1 | CH_atr_62 | 4 | 4 | 0.00000000900258 |
| Brassica carinata | ChrC05 | 1 | CH_bca_955 | 4 | 31 | 0.000507388 |
| Brassica oleracea | C3 | 1 | CH_bol_161 | 4 | 10 | 0.00000326727 |
| Brassica rapa | A10 | 1 | CH_bra_219 | 3 | 4 | 0.000117813 |
| Capsicum annuum | PGAv.1.6.scaffold676 | 1 | CH_can_173 | 4 | 6 | 0.00000103619 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 1 | CH_can_218 | 5 | 32 | 0.0000162512 |
| Cicer arietinum L. | Ca_LG1_v3 | 1 | CH_car_109 | 3 | 3 | 0.0000120852 |
| Corylus avellana | 11 | 1 | CH_cav_223 | 3 | 5 | 0.0000718845 |
| Ceratophyllum demersum | 8 | 1 | CH_cde_62 | 3 | 3 | 0.0000144098 |
| Cardamine hirsuta | Chr1 | 1 | CH_chi_120 | 4 | 6 | 0.0000000719377 |
| Citrullus lanatus | CG_Chr08 | 1 | CH_cla_62 | 4 | 8 | 0.000000447711 |
| Chlamydomonas reinhardtii | chromosome_14 | 1 | CH_cre_41 | 3 | 4 | 0.000253984 |
| Cucumis sativus L. | chr4 | 1 | CH_csa_142 | 4 | 12 | 0.00000263279 |
| Cucumis sativus L. | chr3 | 1 | CH_csa_160 | 3 | 3 | 0.00000852947 |
| Davidia involucrata | GWHABJS00000001 | 1 | CH_din_111 | 4 | 6 | 0.0000000411491 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 1 | CH_eca_212 | 3 | 3 | 0.00000534903 |
| Eucalyptus grandis | Chr05 | 1 | CH_egr_195 | 8 | 42 | 0.000000000000190575 |
| Gossypium hirsutum | D05 | 1 | CH_ghi_209 | 5 | 15 | 0.000000024135 |
| Glycine max | Gm08 | 1 | CH_gma_207 | 4 | 8 | 0.000000845843 |
| Gossypium raimondii | Chr09 | 1 | CH_gra_59 | 7 | 25 | 0.00000000000233927 |
| Helianthus annuus | HanXRQChr04 | 1 | CH_han_1 | 26 | 78 | 9.84506e-51 |
| Helianthus annuus | HanXRQChr02 | 1 | CH_han_302 | 4 | 5 | 0.00000129905 |
| Lonicera japonica | GWHAAZE00000004 | 1 | CH_lonja_170 | 5 | 10 | 0.0000000159276 |
| Malus domestica | Chr05 | 1 | CH_mdo_209 | 4 | 5 | 0.00000015906 |
| Malus domestica | Chr16 | 1 | CH_mdo_210 | 4 | 5 | 0.00000015906 |
| Malus domestica | Chr09 | 1 | CH_mdo_288 | 5 | 28 | 0.00000256865 |
| Medicago truncatula | chr7 | 1 | CH_mtr_274 | 7 | 72 | 0.0000000707584 |
| Medicago truncatula | chr2 | 1 | CH_mtr_301 | 6 | 40 | 0.000000200162 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_107 | 6 | 44 | 0.000000148536 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_40 | 6 | 12 | 0.0000000000198918 |
| Nicotiana tabacum | Nitab4.5_0000605 | 1 | CH_nta_78 | 3 | 3 | 0.0000319862 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_173 | 3 | 3 | 0.0000122376 |
| Oryza sativa ssp. japonica | chr09 | 1 | CH_osa_22 | 6 | 8 | 0.0000000000000765595 |
| Prunus persica | Pp05 | 1 | CH_ppe_135 | 5 | 11 | 0.0000000035982 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_5 | 10 | 29 | 2.59418e-20 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_345 | 3 | 3 | 0.00000498046 |
| Populus trichocarpa | Chr04 | 1 | CH_ptr_277 | 4 | 21 | 0.0000206043 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_249 | 5 | 14 | 0.0000000516623 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_331 | 6 | 58 | 0.000000828194 |
| Striga asiatica | scaffold90 | 1 | CH_sas_74 | 3 | 5 | 0.000077954 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_208 | 3 | 3 | 0.00000253382 |
| Sechium edule | LG07 | 1 | CH_sed_181 | 3 | 5 | 0.0000518739 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_696 | 3 | 3 | 0.0000276599 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_372 | 4 | 28 | 0.000108742 |
| Selaginella moellendorffii | scaffold_5 | 1 | CH_smo_34 | 5 | 12 | 0.000000335011 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_305 | 4 | 28 | 0.000047454 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_412 | 3 | 6 | 0.0000897192 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 1 | CH_tpr_90 | 4 | 4 | 0.000000107042 |
| Tripterygium wilfordii | NC_052243.1 | 1 | CH_twi_52 | 5 | 9 | 0.000000000185504 |
| Vigna mungo | CM024069.1 | 1 | CH_vmu_371 | 3 | 8 | 0.000538764 |
| Vanilla planifolia | CM028155.1 | 1 | CH_vpl_37 | 4 | 6 | 0.0000000555024 |
| Vanilla planifolia | CM028155.1 | 1 | CH_vpl_73 | 5 | 41 | 0.0000014132 |
| Zea mays | 2 | 1 | CH_zma_231 | 4 | 13 | 0.000308107 |
| Zea mays | 9 | 1 | CH_zma_64 | 5 | 8 | 0.0000000429358 |
| Aethionema arabicum | LG-9 | 2 | CH_aar_131 | 4 | 26 | 0.0000613366 |
| Acer truncatum | chr13 | 2 | CH_acertr_211 | 3 | 3 | 0.00000991516 |
| Amborella trichopoda | AmTr_v1.0_scaffold00090 | 2 | CH_atr_146 | 3 | 4 | 0.0000503334 |
| Amborella trichopoda | AmTr_v1.0_scaffold00061 | 2 | CH_atr_62 | 4 | 4 | 0.00000000900258 |
| Brassica carinata | ChrC05 | 2 | CH_bca_955 | 4 | 31 | 0.000507388 |
| Brassica oleracea | C3 | 2 | CH_bol_161 | 4 | 10 | 0.00000326727 |
| Brassica rapa | A10 | 2 | CH_bra_219 | 3 | 4 | 0.000117813 |
| Capsicum annuum | PGAv.1.6.scaffold676 | 2 | CH_can_173 | 4 | 6 | 0.00000103619 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 2 | CH_can_218 | 5 | 32 | 0.0000162512 |
| Cicer arietinum L. | Ca_LG1_v3 | 2 | CH_car_109 | 3 | 3 | 0.0000120852 |
| Corylus avellana | 11 | 2 | CH_cav_223 | 3 | 5 | 0.0000718845 |
| Ceratophyllum demersum | 8 | 2 | CH_cde_62 | 3 | 3 | 0.0000144098 |
| Cardamine hirsuta | Chr1 | 2 | CH_chi_120 | 4 | 6 | 0.0000000719377 |
| Citrullus lanatus | CG_Chr08 | 2 | CH_cla_62 | 4 | 8 | 0.000000447711 |
| Chlamydomonas reinhardtii | chromosome_14 | 2 | CH_cre_41 | 3 | 4 | 0.000253984 |
| Cucumis sativus L. | chr4 | 2 | CH_csa_142 | 4 | 12 | 0.00000263279 |
| Cucumis sativus L. | chr3 | 2 | CH_csa_160 | 3 | 3 | 0.00000852947 |
| Davidia involucrata | GWHABJS00000001 | 2 | CH_din_111 | 4 | 6 | 0.0000000411491 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 2 | CH_eca_212 | 3 | 3 | 0.00000534903 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_195 | 8 | 42 | 0.000000000000190575 |
| Gossypium hirsutum | D05 | 2 | CH_ghi_209 | 5 | 15 | 0.000000024135 |
| Glycine max | Gm08 | 2 | CH_gma_207 | 4 | 8 | 0.000000845843 |
| Gossypium raimondii | Chr09 | 2 | CH_gra_59 | 7 | 25 | 0.00000000000233927 |
| Helianthus annuus | HanXRQChr04 | 2 | CH_han_1 | 26 | 78 | 9.84506e-51 |
| Helianthus annuus | HanXRQChr02 | 2 | CH_han_302 | 4 | 5 | 0.00000129905 |
| Lonicera japonica | GWHAAZE00000004 | 2 | CH_lonja_170 | 5 | 10 | 0.0000000159276 |
| Malus domestica | Chr05 | 2 | CH_mdo_209 | 4 | 5 | 0.00000015906 |
| Malus domestica | Chr16 | 2 | CH_mdo_210 | 4 | 5 | 0.00000015906 |
| Malus domestica | Chr09 | 2 | CH_mdo_288 | 5 | 28 | 0.00000256865 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_107 | 6 | 44 | 0.000000148536 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_40 | 6 | 12 | 0.0000000000198918 |
| Nicotiana tabacum | Nitab4.5_0000605 | 2 | CH_nta_78 | 3 | 3 | 0.0000319862 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_173 | 3 | 3 | 0.0000122376 |
| Oryza sativa ssp. japonica | chr09 | 2 | CH_osa_22 | 6 | 8 | 0.0000000000000765595 |
| Prunus persica | Pp05 | 2 | CH_ppe_135 | 5 | 11 | 0.0000000035982 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_5 | 10 | 29 | 2.59418e-20 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_345 | 3 | 3 | 0.00000498046 |
| Populus trichocarpa | Chr04 | 2 | CH_ptr_277 | 4 | 21 | 0.0000206043 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_249 | 5 | 14 | 0.0000000516623 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_331 | 6 | 58 | 0.000000828194 |
| Striga asiatica | scaffold90 | 2 | CH_sas_74 | 3 | 5 | 0.000077954 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_208 | 3 | 3 | 0.00000253382 |
| Sechium edule | LG07 | 2 | CH_sed_181 | 3 | 5 | 0.0000518739 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_696 | 3 | 3 | 0.0000276599 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_372 | 4 | 28 | 0.000108742 |
| Selaginella moellendorffii | scaffold_5 | 2 | CH_smo_34 | 5 | 12 | 0.000000335011 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_305 | 4 | 28 | 0.000047454 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_412 | 3 | 6 | 0.0000897192 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 2 | CH_tpr_90 | 4 | 4 | 0.000000107042 |
| Tripterygium wilfordii | NC_052243.1 | 2 | CH_twi_52 | 5 | 9 | 0.000000000185504 |
| Vigna mungo | CM024069.1 | 2 | CH_vmu_371 | 3 | 8 | 0.000538764 |
| Vanilla planifolia | CM028155.1 | 2 | CH_vpl_37 | 4 | 6 | 0.0000000555024 |
| Vanilla planifolia | CM028155.1 | 2 | CH_vpl_73 | 5 | 41 | 0.0000014132 |
| Zea mays | 2 | 2 | CH_zma_231 | 4 | 13 | 0.000308107 |
| Zea mays | 9 | 2 | CH_zma_64 | 5 | 8 | 0.0000000429358 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |