Functional clusters
Information
- Type MapMan
- Description Enzyme classification.EC_3 hydrolases.EC_3.1 hydrolase acting on ester bond
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_196 | 3 | 3 | 0.0000150307 |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_197 | 3 | 3 | 0.0000150307 |
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_43 | 7 | 37 | 0.0000000000317174 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_14 | 1 | CH_amhyb_83 | 3 | 3 | 0.00000595202 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 1 | CH_arhy_170 | 5 | 7 | 0.0000000018974 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 1 | CH_arhy_180 | 5 | 8 | 0.00000000505537 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 1 | CH_arhy_606 | 3 | 4 | 0.000334216 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_166 | 3 | 3 | 0.00000119302 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_185 | 3 | 4 | 0.00000477117 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_207 | 3 | 6 | 0.000023847 |
| Brassica carinata | Contig959 | 1 | CH_bca_823 | 3 | 4 | 0.00021668 |
| Brassica carinata | ChrB07 | 1 | CH_bca_963 | 3 | 5 | 0.000541363 |
| Brassica napus | A01 | 1 | CH_bna_184 | 4 | 4 | 0.0000000535206 |
| Brassica oleracea | C2 | 1 | CH_bol_213 | 4 | 13 | 0.000018614 |
| Brassica oleracea | C3 | 1 | CH_bol_236 | 3 | 3 | 0.0000333742 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_154 | 3 | 4 | 0.000063298 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_98 | 4 | 6 | 0.00000018659 |
| Cannabis sativa | NC_044371.1 | 1 | CH_cansat_174 | 3 | 4 | 0.0000117677 |
| Corylus avellana | 4 | 1 | CH_cav_383 | 3 | 6 | 0.000404796 |
| Coffea canephora | chr10 | 1 | CH_ccan_369 | 2 | 2 | 0.000809192 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_256 | 3 | 5 | 0.0000288489 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_66 | 5 | 6 | 0.0000000000436421 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_213 | 3 | 3 | 0.0000123494 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_97 | 4 | 4 | 0.00000000857849 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_255 | 3 | 4 | 0.000071345 |
| Erythranthe guttata | scaffold_1 | 1 | CH_egut_109 | 5 | 9 | 0.00000000213901 |
| Erythranthe guttata | scaffold_5 | 1 | CH_egut_250 | 3 | 3 | 0.0000232633 |
| Eutrema salsugineum | scaffold_1 | 1 | CH_esa_130 | 3 | 3 | 0.00000991633 |
| Eutrema salsugineum | scaffold_1 | 1 | CH_esa_131 | 3 | 3 | 0.00000991633 |
| Helianthus annuus | HanXRQChr10 | 1 | CH_han_38 | 8 | 29 | 2.70027e-16 |
| Lonicera japonica | GWHAAZE00000005 | 1 | CH_lonja_48 | 8 | 14 | 1.60067e-16 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 1 | CH_lsa_297 | 3 | 3 | 0.0000178143 |
| Nelumbo nucifera | chr6 | 1 | CH_nnu_144 | 4 | 12 | 0.00000568405 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_309 | 5 | 77 | 0.000211429 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_335 | 3 | 3 | 0.00000377434 |
| Quercus lobata | 12 | 1 | CH_qlo_558 | 4 | 11 | 0.00000629039 |
| Quercus lobata | 4 | 1 | CH_qlo_608 | 3 | 3 | 0.0000239265 |
| Quercus lobata | 11 | 1 | CH_qlo_945 | 3 | 6 | 0.000477632 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_417 | 3 | 4 | 0.0000126787 |
| Rhododendron simsii | chr05 | 1 | CH_rsi_221 | 4 | 8 | 0.00000059838 |
| Salix brachista | GWHAAZH00000003 | 1 | CH_sbr_188 | 4 | 13 | 0.0000126728 |
| Simmondsia chinensis | GWHAASQ00000003 | 1 | CH_sci_239 | 3 | 7 | 0.000258303 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_493 | 4 | 4 | 0.0000000388232 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_706 | 3 | 3 | 0.0000408669 |
| Schrenkiella parvula | ch7-4 | 1 | CH_spa_132 | 3 | 3 | 0.00000632327 |
| Trochodendron aralioides | group12 | 1 | CH_tar_200 | 3 | 3 | 0.0000083264 |
| Tripterygium wilfordii | NC_052240.1 | 1 | CH_twi_127 | 3 | 3 | 0.00000317039 |
| Tripterygium wilfordii | NC_052248.1 | 1 | CH_twi_151 | 3 | 4 | 0.0000126775 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_196 | 3 | 3 | 0.0000150307 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_197 | 3 | 3 | 0.0000150307 |
| Arabidopsis lyrata | scaffold_8 | 2 | CH_aly_43 | 7 | 37 | 0.0000000000317174 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_14 | 2 | CH_amhyb_83 | 3 | 3 | 0.00000595202 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 2 | CH_arhy_170 | 5 | 7 | 0.0000000018974 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 2 | CH_arhy_180 | 5 | 8 | 0.00000000505537 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 2 | CH_arhy_606 | 3 | 4 | 0.000334216 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_166 | 3 | 3 | 0.00000119302 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_185 | 3 | 4 | 0.00000477117 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_207 | 3 | 6 | 0.000023847 |
| Brassica carinata | Contig959 | 2 | CH_bca_823 | 3 | 4 | 0.00021668 |
| Brassica carinata | ChrB07 | 2 | CH_bca_963 | 3 | 5 | 0.000541363 |
| Brassica oleracea | C2 | 2 | CH_bol_213 | 4 | 13 | 0.000018614 |
| Brassica oleracea | C3 | 2 | CH_bol_236 | 3 | 3 | 0.0000333742 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_154 | 3 | 4 | 0.000063298 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_98 | 4 | 6 | 0.00000018659 |
| Cannabis sativa | NC_044371.1 | 2 | CH_cansat_174 | 3 | 4 | 0.0000117677 |
| Corylus avellana | 4 | 2 | CH_cav_383 | 3 | 6 | 0.000404796 |
| Coffea canephora | chr10 | 2 | CH_ccan_369 | 2 | 2 | 0.000809192 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_256 | 3 | 5 | 0.0000288489 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_66 | 5 | 6 | 0.0000000000436421 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_213 | 3 | 3 | 0.0000123494 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_97 | 4 | 4 | 0.00000000857849 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_255 | 3 | 4 | 0.000071345 |
| Erythranthe guttata | scaffold_1 | 2 | CH_egut_109 | 5 | 9 | 0.00000000213901 |
| Erythranthe guttata | scaffold_5 | 2 | CH_egut_250 | 3 | 3 | 0.0000232633 |
| Eutrema salsugineum | scaffold_1 | 2 | CH_esa_130 | 3 | 3 | 0.00000991633 |
| Eutrema salsugineum | scaffold_1 | 2 | CH_esa_131 | 3 | 3 | 0.00000991633 |
| Helianthus annuus | HanXRQChr10 | 2 | CH_han_38 | 8 | 29 | 2.70027e-16 |
| Lonicera japonica | GWHAAZE00000005 | 2 | CH_lonja_48 | 8 | 14 | 1.60067e-16 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 2 | CH_lsa_297 | 3 | 3 | 0.0000178143 |
| Nelumbo nucifera | chr6 | 2 | CH_nnu_144 | 4 | 12 | 0.00000568405 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_309 | 5 | 77 | 0.000211429 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_335 | 3 | 3 | 0.00000377434 |
| Quercus lobata | 12 | 2 | CH_qlo_558 | 4 | 11 | 0.00000629039 |
| Quercus lobata | 4 | 2 | CH_qlo_608 | 3 | 3 | 0.0000239265 |
| Quercus lobata | 11 | 2 | CH_qlo_945 | 3 | 6 | 0.000477632 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_417 | 3 | 4 | 0.0000126787 |
| Rhododendron simsii | chr05 | 2 | CH_rsi_221 | 4 | 8 | 0.00000059838 |
| Salix brachista | GWHAAZH00000003 | 2 | CH_sbr_188 | 4 | 13 | 0.0000126728 |
| Simmondsia chinensis | GWHAASQ00000003 | 2 | CH_sci_239 | 3 | 7 | 0.000258303 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_493 | 4 | 4 | 0.0000000388232 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_706 | 3 | 3 | 0.0000408669 |
| Schrenkiella parvula | ch7-4 | 2 | CH_spa_132 | 3 | 3 | 0.00000632327 |
| Trochodendron aralioides | group12 | 2 | CH_tar_200 | 3 | 3 | 0.0000083264 |
| Tripterygium wilfordii | NC_052240.1 | 2 | CH_twi_127 | 3 | 3 | 0.00000317039 |
| Tripterygium wilfordii | NC_052248.1 | 2 | CH_twi_151 | 3 | 4 | 0.0000126775 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |