Functional clusters
Information
- Type MapMan
- Description Enzyme classification.EC_2 transferases.EC_2.5 transferase transferring alkyl or aryl group, other than methyl group
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC04 | 1 | CH_bca_486 | 3 | 4 | 0.0000111289 |
| Brassica napus | C05 | 1 | CH_bna_501 | 3 | 9 | 0.0000996408 |
| Camellia sinensis var. sinensis | Chr6 | 1 | CH_camsi_506 | 3 | 6 | 0.0000352993 |
| Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_678 | 3 | 9 | 0.000148148 |
| Citrus clementina | scaffold_5 | 1 | CH_ccl_33 | 6 | 7 | 2.70333e-16 |
| Carya illinoinensis | Chr07 | 1 | CH_cil_241 | 3 | 3 | 0.000000484091 |
| Cucumis melo | chr02 | 1 | CH_cme_54 | 4 | 5 | 0.000000000561084 |
| Carica papaya | supercontig_117 | 1 | CH_cpa_28 | 4 | 5 | 0.00000000637797 |
| Fragaria x ananassa | Fvb6-1 | 1 | CH_fan_367 | 3 | 5 | 0.0000679786 |
| Fragaria vesca | Fvb6 | 1 | CH_fve_119 | 4 | 11 | 0.0000000254781 |
| Gossypium hirsutum | A13 | 1 | CH_ghi_339 | 3 | 3 | 0.00000164699 |
| Lotus japonicus | chr5 | 1 | CH_lja_175 | 3 | 3 | 0.0000012656 |
| Lonicera japonica | GWHAAZE00000009 | 1 | CH_lonja_237 | 4 | 16 | 0.000000579013 |
| Malus domestica | Chr04 | 1 | CH_mdo_332 | 3 | 4 | 0.00000835871 |
| Medicago truncatula | chr1 | 1 | CH_mtr_342 | 3 | 3 | 0.00000055708 |
| Olea europaea | chr10 | 1 | CH_oeu_53 | 4 | 5 | 0.0000000201946 |
| Oryza sativa ssp. japonica | chr06 | 1 | CH_osa_131 | 3 | 3 | 0.00000035144 |
| Physcomitrium patens | Chr23 | 1 | CH_ppa_70 | 3 | 6 | 0.000032188 |
| Populus trichocarpa | Chr05 | 1 | CH_ptr_214 | 3 | 3 | 0.000000826885 |
| Quercus lobata | 3 | 1 | CH_qlo_446 | 4 | 10 | 0.000000335399 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_38 | 8 | 13 | 2.07247e-20 |
| Rhododendron simsii | chr05 | 1 | CH_rsi_59 | 7 | 30 | 0.000000000000131631 |
| Salix brachista | GWHAAZH00000005 | 1 | CH_sbr_348 | 3 | 16 | 0.000399241 |
| Sechium edule | LG06 | 1 | CH_sed_32 | 5 | 6 | 0.00000000000350022 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_1 | 16 | 18 | 2.82252e-37 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_19 | 11 | 14 | 3.35913e-23 |
| Solanum lycopersicum | SL4.0ch01 | 1 | CH_sly_193 | 4 | 4 | 0.000000737359 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_23 | 15 | 74 | 1.73537e-21 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_31 | 11 | 28 | 1.93367e-18 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_64 | 10 | 54 | 0.00000000000109554 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_192 | 3 | 3 | 0.000002018 |
| Solanum tuberosum | ST4.03ch04 | 1 | CH_stu_212 | 6 | 35 | 0.000000405716 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_251 | 4 | 6 | 0.00000221956 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_285 | 4 | 7 | 0.00000517333 |
| Solanum tuberosum | ST4.03ch00 | 1 | CH_stu_45 | 7 | 8 | 0.00000000000000264408 |
| Solanum tuberosum | ST4.03ch10 | 1 | CH_stu_544 | 3 | 4 | 0.000436324 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_450 | 1 | CH_tpr_153 | 3 | 4 | 0.00000288747 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_149 | 3 | 3 | 0.00000213722 |
| Vitis vinifera | chr14 | 1 | CH_vvi_58 | 6 | 11 | 0.000000000000211636 |
| Zea mays | 9 | 1 | CH_zma_49 | 5 | 17 | 0.00000000367487 |
| Brassica carinata | ChrC04 | 2 | CH_bca_486 | 3 | 4 | 0.0000111289 |
| Camellia sinensis var. sinensis | Chr6 | 2 | CH_camsi_506 | 3 | 6 | 0.0000352993 |
| Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_678 | 3 | 9 | 0.000148148 |
| Citrus clementina | scaffold_5 | 2 | CH_ccl_33 | 6 | 7 | 2.70333e-16 |
| Carya illinoinensis | Chr07 | 2 | CH_cil_241 | 3 | 3 | 0.000000484091 |
| Cucumis melo | chr02 | 2 | CH_cme_54 | 4 | 5 | 0.000000000561084 |
| Carica papaya | supercontig_117 | 2 | CH_cpa_28 | 4 | 5 | 0.00000000637797 |
| Fragaria x ananassa | Fvb6-1 | 2 | CH_fan_367 | 3 | 5 | 0.0000679786 |
| Fragaria vesca | Fvb6 | 2 | CH_fve_119 | 4 | 11 | 0.0000000254781 |
| Gossypium hirsutum | A13 | 2 | CH_ghi_339 | 3 | 3 | 0.00000164699 |
| Lotus japonicus | chr5 | 2 | CH_lja_175 | 3 | 3 | 0.0000012656 |
| Lonicera japonica | GWHAAZE00000009 | 2 | CH_lonja_237 | 4 | 16 | 0.000000579013 |
| Malus domestica | Chr04 | 2 | CH_mdo_332 | 3 | 4 | 0.00000835871 |
| Olea europaea | chr10 | 2 | CH_oeu_53 | 4 | 5 | 0.0000000201946 |
| Oryza sativa ssp. japonica | chr06 | 2 | CH_osa_131 | 3 | 3 | 0.00000035144 |
| Physcomitrium patens | Chr23 | 2 | CH_ppa_70 | 3 | 6 | 0.000032188 |
| Populus trichocarpa | Chr05 | 2 | CH_ptr_214 | 3 | 3 | 0.000000826885 |
| Quercus lobata | 3 | 2 | CH_qlo_446 | 4 | 10 | 0.000000335399 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_38 | 8 | 13 | 2.07247e-20 |
| Rhododendron simsii | chr05 | 2 | CH_rsi_59 | 7 | 30 | 0.000000000000131631 |
| Salix brachista | GWHAAZH00000005 | 2 | CH_sbr_348 | 3 | 16 | 0.000399241 |
| Sechium edule | LG06 | 2 | CH_sed_32 | 5 | 6 | 0.00000000000350022 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_1 | 16 | 18 | 2.82252e-37 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_19 | 11 | 14 | 3.35913e-23 |
| Solanum lycopersicum | SL4.0ch01 | 2 | CH_sly_193 | 4 | 4 | 0.000000737359 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_23 | 15 | 74 | 1.73537e-21 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_31 | 11 | 28 | 1.93367e-18 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_64 | 10 | 54 | 0.00000000000109554 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_192 | 3 | 3 | 0.000002018 |
| Solanum tuberosum | ST4.03ch04 | 2 | CH_stu_212 | 6 | 35 | 0.000000405716 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_251 | 4 | 6 | 0.00000221956 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_285 | 4 | 7 | 0.00000517333 |
| Solanum tuberosum | ST4.03ch00 | 2 | CH_stu_45 | 7 | 8 | 0.00000000000000264408 |
| Solanum tuberosum | ST4.03ch10 | 2 | CH_stu_544 | 3 | 4 | 0.000436324 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_450 | 2 | CH_tpr_153 | 3 | 4 | 0.00000288747 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_149 | 3 | 3 | 0.00000213722 |
| Vitis vinifera | chr14 | 2 | CH_vvi_58 | 6 | 11 | 0.000000000000211636 |
| Zea mays | 9 | 2 | CH_zma_49 | 5 | 17 | 0.00000000367487 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |