Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.lipid droplet-associated activities.dehydrogenase (STEROLEOSIN/SLO/HSD)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_368 1 CH_aag_195 2 2 0.000802568
Aethionema arabicum LG-4 1 CH_aar_42 4 5 0.00000000017086
Acer truncatum chr6 1 CH_acertr_446 2 2 0.000211491
Actinidia chinensis Lachesis_group13 1 CH_ach_279 2 2 0.000814819
Actinidia chinensis Lachesis_group1 1 CH_ach_280 2 2 0.000814819
Arabidopsis lyrata scaffold_8 1 CH_aly_385 2 2 0.000396027
Aquilegia oxysepala CHR05 1 CH_aox_243 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_240 3 4 0.000000188215
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_241 3 4 0.000000188215
Arabidopsis thaliana Chr5 1 CH_ath_58 5 44 0.000000000306715
Brassica carinata ChrB08 1 CH_bca_281 3 3 0.000000249498
Cannabis sativa NC_044370.1 1 CH_cansat_381 2 2 0.000656642
Capsicum annuum PGAv.1.6.scaffold732 1 CH_can_361 2 2 0.000247831
Cicer arietinum L. Ca_LG6_v3 1 CH_car_220 2 3 0.000233481
Corylus avellana 4 1 CH_cav_376 2 2 0.000230008
Coffea canephora chr0 1 CH_ccan_320 2 9 0.000459951
Citrus clementina scaffold_4 1 CH_ccl_414 2 2 0.000246093
Carpinus fangiana Cfa08 1 CH_cfa_322 2 2 0.000227204
Cardamine hirsuta Chr5 1 CH_chi_145 3 4 0.000000573272
Cucumis melo chr12 1 CH_cme_38 4 4 0.00000000000445379
Carica papaya supercontig_4 1 CH_cpa_321 2 2 0.000285198
Chenopodium quinoa C_Quinoa_Scaffold_2306 1 CH_cqu_175 3 4 0.000000269394
Chenopodium quinoa C_Quinoa_Scaffold_1526 1 CH_cqu_571 2 2 0.000710732
Capsella rubella scaffold_8 1 CH_cru_199 3 8 0.00000448864
Cucumis sativus L. chr1 1 CH_csa_101 3 3 0.0000000418111
Daucus carota DCARv2_Chr2 1 CH_dca_92 3 3 0.0000000244062
Davidia involucrata GWHABJS00000008 1 CH_din_536 2 3 0.000900173
Durio zibethinus NW_019168381.1 1 CH_dzi_339 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_538 2 2 0.000942317
Erythranthe guttata scaffold_9 1 CH_egut_383 2 2 0.000218444
Eutrema salsugineum scaffold_2 1 CH_esa_143 3 12 0.0000382309
Gossypium raimondii Chr01 1 CH_gra_378 2 2 0.000321664
Helianthus annuus HanXRQChr05 1 CH_han_402 3 7 0.0000285166
Lonicera japonica GWHAAZE00000009 1 CH_lonja_320 3 5 0.000024464
Lonicera japonica GWHAAZE00000001 1 CH_lonja_64 7 26 0.0000000000000153152
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_211 3 3 0.000000475577
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_264 3 5 0.00000475425
Malus domestica Chr14 1 CH_mdo_178 3 3 0.0000000215706
Manihot esculenta Chromosome06 1 CH_mes_76 4 4 0.00000000000341561
Nelumbo nucifera chr3 1 CH_nnu_124 3 3 0.000000815585
Prunus persica Pp05 1 CH_ppe_185 3 4 0.000000133547
Papaver somniferum NC_039361.1 1 CH_pso_135 4 6 0.000000000367577
Papaver somniferum NC_039362.1 1 CH_pso_340 3 6 0.00000435142
Phaseolus vulgaris Chr02 1 CH_pvu_312 2 2 0.0000734727
Quercus lobata 10 1 CH_qlo_205 5 9 0.00000000000531482
Quercus lobata 5 1 CH_qlo_463 4 17 0.000000485218
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_616 2 2 0.000119596
Rhododendron simsii chr08 1 CH_rsi_81 4 4 0.0000000000120935
Salvia bowleyana GWHASIU00000003 1 CH_sbo_301 3 19 0.000060107
Salix brachista GWHAAZH00000015 1 CH_sbr_397 2 2 0.00063014
Schrenkiella parvula ch6-6 1 CH_spa_131 3 11 0.00000613391
Solanum tuberosum ST4.03ch03 1 CH_stu_577 2 2 0.000512453
Trochodendron aralioides group8 1 CH_tar_536 2 2 0.000600366
Theobroma cacao Chromosome_3 1 CH_tca_33 5 6 0.00000000000000776945
Tarenaya hassleriana NW_010965372.1 1 CH_tha_10 5 7 0.000000000000209916
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_79 3 3 0.0000000343818
Tripterygium wilfordii NC_052250.1 1 CH_twi_108 3 4 0.000000652655
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_403 2 3 0.00083625
Vigna mungo CM024069.1 1 CH_vmu_231 2 2 0.0000646141
Vanilla planifolia CM028160.1 1 CH_vpl_36 4 18 0.0000000554778
Vitis vinifera chr1 1 CH_vvi_439 2 2 0.00076063
Vitis vinifera chr17 1 CH_vvi_440 2 2 0.00076063
Anthoceros agrestis Sc2ySwM_368 2 CH_aag_195 2 2 0.000802568
Aethionema arabicum LG-4 2 CH_aar_42 4 5 0.00000000017086
Acer truncatum chr6 2 CH_acertr_446 2 2 0.000211491
Actinidia chinensis Lachesis_group13 2 CH_ach_279 2 2 0.000814819
Actinidia chinensis Lachesis_group1 2 CH_ach_280 2 2 0.000814819
Arabidopsis lyrata scaffold_8 2 CH_aly_385 2 2 0.000396027
Aquilegia oxysepala CHR05 2 CH_aox_243 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_240 3 4 0.000000188215
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_241 3 4 0.000000188215
Arabidopsis thaliana Chr5 2 CH_ath_58 5 44 0.000000000306715
Brassica carinata ChrB08 2 CH_bca_281 3 3 0.000000249498
Cannabis sativa NC_044370.1 2 CH_cansat_381 2 2 0.000656642
Capsicum annuum PGAv.1.6.scaffold732 2 CH_can_361 2 2 0.000247831
Cicer arietinum L. Ca_LG6_v3 2 CH_car_220 2 3 0.000233481
Corylus avellana 4 2 CH_cav_376 2 2 0.000230008
Coffea canephora chr0 2 CH_ccan_320 2 9 0.000459951
Citrus clementina scaffold_4 2 CH_ccl_414 2 2 0.000246093
Carpinus fangiana Cfa08 2 CH_cfa_322 2 2 0.000227204
Cardamine hirsuta Chr5 2 CH_chi_145 3 4 0.000000573272
Cucumis melo chr12 2 CH_cme_38 4 4 0.00000000000445379
Carica papaya supercontig_4 2 CH_cpa_321 2 2 0.000285198
Chenopodium quinoa C_Quinoa_Scaffold_2306 2 CH_cqu_175 3 4 0.000000269394
Chenopodium quinoa C_Quinoa_Scaffold_1526 2 CH_cqu_571 2 2 0.000710732
Capsella rubella scaffold_8 2 CH_cru_199 3 8 0.00000448864
Cucumis sativus L. chr1 2 CH_csa_101 3 3 0.0000000418111
Daucus carota DCARv2_Chr2 2 CH_dca_92 3 3 0.0000000244062
Davidia involucrata GWHABJS00000008 2 CH_din_536 2 3 0.000900173
Durio zibethinus NW_019168381.1 2 CH_dzi_339 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_538 2 2 0.000942317
Eucalyptus grandis Chr11 2 CH_egr_847 2 2 0.000351165
Erythranthe guttata scaffold_9 2 CH_egut_383 2 2 0.000218444
Eutrema salsugineum scaffold_2 2 CH_esa_143 3 12 0.0000382309
Gossypium hirsutum A07 2 CH_ghi_917 2 2 0.000961256
Gossypium hirsutum D07 2 CH_ghi_918 2 2 0.000961256
Gossypium raimondii Chr01 2 CH_gra_378 2 2 0.000321664
Helianthus annuus HanXRQChr05 2 CH_han_402 3 7 0.0000285166
Lonicera japonica GWHAAZE00000009 2 CH_lonja_320 3 5 0.000024464
Lonicera japonica GWHAAZE00000001 2 CH_lonja_64 7 26 0.0000000000000153152
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_211 3 3 0.000000475577
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_264 3 5 0.00000475425
Malus domestica Chr14 2 CH_mdo_178 3 3 0.0000000215706
Manihot esculenta Chromosome06 2 CH_mes_76 4 4 0.00000000000341561
Nelumbo nucifera chr3 2 CH_nnu_124 3 3 0.000000815585
Prunus persica Pp05 2 CH_ppe_185 3 4 0.000000133547
Papaver somniferum NC_039361.1 2 CH_pso_135 4 6 0.000000000367577
Papaver somniferum NC_039362.1 2 CH_pso_340 3 6 0.00000435142
Phaseolus vulgaris Chr02 2 CH_pvu_312 2 2 0.0000734727
Quercus lobata 10 2 CH_qlo_205 5 9 0.00000000000531482
Quercus lobata 5 2 CH_qlo_463 4 17 0.000000485218
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_616 2 2 0.000119596
Rhododendron simsii chr08 2 CH_rsi_81 4 4 0.0000000000120935
Salvia bowleyana GWHASIU00000003 2 CH_sbo_301 3 19 0.000060107
Salix brachista GWHAAZH00000015 2 CH_sbr_397 2 2 0.00063014
Schrenkiella parvula ch6-6 2 CH_spa_131 3 11 0.00000613391
Solanum tuberosum ST4.03ch03 2 CH_stu_577 2 2 0.000512453
Trochodendron aralioides group8 2 CH_tar_536 2 2 0.000600366
Theobroma cacao Chromosome_3 2 CH_tca_33 5 6 0.00000000000000776945
Tarenaya hassleriana NW_010965372.1 2 CH_tha_10 5 7 0.000000000000209916
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_79 3 3 0.0000000343818
Tripterygium wilfordii NC_052250.1 2 CH_twi_108 3 4 0.000000652655
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_403 2 3 0.00083625
Vigna mungo CM024069.1 2 CH_vmu_231 2 2 0.0000646141
Vanilla planifolia CM028160.1 2 CH_vpl_36 4 18 0.0000000554778
Vitis vinifera chr1 2 CH_vvi_439 2 2 0.00076063
Vitis vinifera chr17 2 CH_vvi_440 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001